initialisation maps example rerun to ensure it works with the variabl…

…e name changes, also cleaned up the final plotting code

docs/examples/example_initialisation_maps.ipynb

@@ -1183,7 +1183,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "/tmp/ipykernel_42384/2574947031.py:1: DtypeWarning: Columns (1,2,3,4) have mixed types. Specify dtype option on import or set low_memory=False.\n",
+      "/tmp/ipykernel_498482/2574947031.py:1: DtypeWarning: Columns (1,2,3,4) have mixed types. Specify dtype option on import or set low_memory=False.\n",
       "  concentrations_ds = pd.read_csv(settings['release_maps']['global_concentrations'])\n"
      ]
     }
@@ -1669,7 +1669,7 @@
     "# Plot the coastal initialisation map\n",
     "ax = plt.subplot(gs[0,0], projection=ccrs.Robinson())\n",
     "vmin, vmax = 1e-1, 1e3\n",
-    "cb = ax.scatter(pset_coastal.lon, pset_coastal.lat, c=pset_coastal.plastic_amount, s=0.25, cmap=plt.cm.inferno, transform=ccrs.PlateCarree(), vmin=vmin, vmax =vmax, norm=matplotlib.colors.LogNorm())\n",
+    "cb = ax.scatter(pset_coastal.lon, pset_coastal.lat, c=pset_coastal.plastic_amount, s=0.25, cmap=plt.cm.inferno, transform=ccrs.PlateCarree(), vmin=vmin, vmax=vmax, norm=matplotlib.colors.LogNorm())\n",
     "ax.add_feature(cfeature.LAND, zorder=0, color='grey')\n",
     "ax.set_global()\n",
     "cbar_ax = ax.inset_axes(cb_axes_position)\n",
@@ -1680,7 +1680,7 @@
     "# Plot the rivers initialisation map\n",
     "ax = plt.subplot(gs[0,2], projection=ccrs.Robinson())\n",
     "vmin, vmax = 1e-1, 1e2\n",
-    "cb = ax.scatter(pset_rivers.lon, pset_rivers.lat, c=pset_rivers.plastic_amount, s=0.25, cmap=cmocean.cm.solar, transform=ccrs.PlateCarree(), vmin=vmin, vmax =vmax, norm=matplotlib.colors.LogNorm())\n",
+    "cb = ax.scatter(pset_rivers.lon, pset_rivers.lat, c=pset_rivers.plastic_amount, s=0.25, cmap=cmocean.cm.solar, transform=ccrs.PlateCarree(), vmin=vmin, vmax=vmax, norm=matplotlib.colors.LogNorm())\n",
     "ax.add_feature(cfeature.LAND, zorder=0, color='grey')\n",
     "ax.set_global()\n",
     "cbar_ax = ax.inset_axes(cb_axes_position)\n",
@@ -1691,7 +1691,7 @@
     "# Plot the fisheries initialisation map\n",
     "ax = plt.subplot(gs[1,0], projection=ccrs.Robinson())\n",
     "vmin, vmax = 1e-1, 1e3\n",
-    "cb = ax.scatter(pset_fisheries.lon, pset_fisheries.lat, c=pset_fisheries.plastic_amount, s=0.1, cmap=plt.cm.Spectral_r, transform=ccrs.PlateCarree(), vmin=vmin, vmax =vmax, norm=matplotlib.colors.LogNorm())\n",
+    "cb = ax.scatter(pset_fisheries.lon, pset_fisheries.lat, c=pset_fisheries.plastic_amount, s=0.1, cmap=plt.cm.Spectral_r, transform=ccrs.PlateCarree(), vmin=vmin, vmax=vmax, norm=matplotlib.colors.LogNorm())\n",
     "ax.add_feature(cfeature.LAND, zorder=0, color='grey')\n",
     "ax.set_global()\n",
     "cbar_ax = ax.inset_axes(cb_axes_position)\n",
@@ -1701,10 +1701,10 @@
     "\n",
     "# Plot the current concentrations initialisation map\n",
     "ax = plt.subplot(gs[1,2], projection=ccrs.Robinson())\n",
-    "vmin, vmax = 1e-1, 200\n",
-    "vmin2, vmax2 = 1e-6, 0.05\n",
-    "cb1 = ax.scatter(pset_conc_ocean.lon, pset_conc_ocean.lat, c=pset_conc_ocean.plastic_amount, s=0.25, cmap=plt.cm.viridis, transform=ccrs.PlateCarree(), vmin=vmin2, vmax =vmax2, norm=matplotlib.colors.LogNorm())\n",
-    "cb2 = ax.scatter(pset_conc_beach.lon, pset_conc_beach.lat, c=pset_conc_beach.plastic_amount, s=0.25, cmap=plt.cm.magma, transform=ccrs.PlateCarree(), vmin=vmin, vmax =vmax, norm=matplotlib.colors.LogNorm())\n",
+    "vmin, vmax = 1e-6, 0.05\n",
+    "vmin2, vmax2 = 1e-1, 200\n",
+    "cb1 = ax.scatter(pset_conc_ocean.lon, pset_conc_ocean.lat, c=pset_conc_ocean.plastic_amount, s=0.25, cmap=plt.cm.viridis, transform=ccrs.PlateCarree(), vmin=vmin, vmax=vmax, norm=matplotlib.colors.LogNorm())\n",
+    "cb2 = ax.scatter(pset_conc_beach.lon, pset_conc_beach.lat, c=pset_conc_beach.plastic_amount, s=0.25, cmap=plt.cm.magma, transform=ccrs.PlateCarree(), vmin=vmin2, vmax=vmax2, norm=matplotlib.colors.LogNorm())\n",
     "ax.add_feature(cfeature.LAND, zorder=0, color='grey')\n",
     "ax.set_global()\n",
     "cbar_ax1 = ax.inset_axes(cb_axes_position)\n",