Skip to content

Commit

Permalink
add docs on vnc_container bc templates (#908)
Browse files Browse the repository at this point in the history
Add documentation on vnc_container batch connect templates.
  • Loading branch information
johrstrom authored Dec 8, 2023
1 parent fb79ee4 commit 7f6862e
Show file tree
Hide file tree
Showing 3 changed files with 171 additions and 10 deletions.
38 changes: 28 additions & 10 deletions source/how-tos/app-development/interactive/submit.rst
Original file line number Diff line number Diff line change
Expand Up @@ -96,23 +96,41 @@ The three possible configuration options that can be used in the
Each of these configuration options take a set of their own configuration
options described below.
Configure Batch Connect
```````````````````````
Batch Connect Template types
````````````````````````````
All batch scripts are generated from either the ``basic`` template or the
``vnc`` template specified with the following configuration option:
Open OnDemand has three distinct batch connect template types.
These template types determine the resulting shell scripts that wrap
your batch connect application.
For example the ``vnc`` type will provide a script that boots up a
VNC server, exports a ``DISPLAY`` variable and other utilities to
ensure that the job has been bootstrapped appropriately to
start GUI applications.
The options available are ``basic``, ``vnc`` or ``vnc_container``.
``vnc_container`` is basically just like ``vnc`` only in that it
boostraps the VNC programs inside a container instead of on the
host machine.
.. describe:: template (String)
the template used for rendering the batch script (``"basic"`` or ``"vnc"``)
The template used to create the wrapper script for your batch connect
application.
Default
``"basic"``
Default
Generate a basic wrapper script for HTTP applications.
Example
Render a batch script for a VNC Interactive Application
.. code-block:: yaml
.. code-block:: yaml
---
batch_connect:
template: "basic"
Example
Generate a wrapper script for a VNC interactive application.

.. code-block:: yaml
# ${HOME}/ondemand/dev/my_app/submit.yml.erb
---
Expand Down
1 change: 1 addition & 0 deletions source/reference/files/submit-yml-erb.rst
Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,7 @@ These are reference pages, you can see

submit-yml/basic-bc-options
submit-yml/vnc-bc-options
submit-yml/vnc-container-bc-options
submit-yml/script

Simple Example
Expand Down
142 changes: 142 additions & 0 deletions source/reference/files/submit-yml/vnc-container-bc-options.rst
Original file line number Diff line number Diff line change
@@ -0,0 +1,142 @@
.. _vnc-container-bc-options:

Batch Connect VNC Container Options
===================================


All the options in :ref:`vnc-bc-options` apply in addition to what's listed below.

# @option context [#to_s] :container_path ("vnc_container.sif") the path
# to the container with VNC
# @option context [#to_s] :container_bindpath ("") paths to bind into
# the container with VNC
# @option context [#to_s] :container_module ("singularity") the module
# that loads Singularity or Apptainer with Lmod. Supports versions (i.e.
# apptainer/1.10). If Singularity or Apptainer are installed at a
# system level (i.e., no module loaded to activate), set this to an
# empty string.
# @option context [#to_s] :container_command ("singularity") the
# singularity or apptainer execution command

.. code-block:: yaml
batch_connect:
template: "vnc_container"
# other 'vnc' or 'basic' options removed for brevity.
container_path: "vnc_container.sif"
container_bindpath: ""
container_module: "singularity"
container_command: "singularity"
.. describe:: container_path (String, "vnc_container.sif")

The full path to the container image you wish to boot.

Default
Load the vnc_container.sif image.

.. code-block:: yaml
container_path: "vnc_container.sif"
Example
Provide an absolute path to a ``vnc_container.sif`` image.

.. code-block:: yaml
container_path: "/absolute/path/to/my/container/vnc_container.sif"
.. describe:: container_bindpath (String, "")

A comma seperated list of mountpoints you wish to bind into the container.

Default
Do not bind any paths into the container.

.. code-block:: yaml
container_bindpath: ""
Example
Bind /etc, /dev and /usr into the container.

.. code-block:: yaml
container_bindpath: "/etc,/dev,/usr"
.. describe:: container_module (String, "singularity")

The module to load before starting the container.

Default
Load the ``singularity`` module.

.. code-block:: yaml
container_module: "singularity"
Example
Load the ``singularity/1.1.3`` module.

.. code-block:: yaml
container_module: "singularity/1.1.3"
.. describe:: container_command (String, "singularity")

The command used to start the container.

Default
Use the ``singularity`` command.

.. code-block:: yaml
container_module: "singularity"
Example
Use the ``apptainer`` command.

.. code-block:: yaml
container_module: "apptainer"
Starter def file
................

This is a ``.def`` file that we've tested this feature with.
You can use this as an example to start and update as required.


.. note::
Note that we're installing turbovnc and websockify *inside*
the container. This is important as all processes will run
inside the contianer and not on the host.

You can still install these on the host machine, but they will
need to be mounted inside the container as the processes are
expected to be ran *inside* the container.

.. code-block:: singularity
Bootstrap: docker
From: rockylinux/rockylinux:8
%environment
PATH=/opt/TurboVNC/bin:$PATH
LANGUAGE="en_US.UTF-8"
LC_ALL="en_US.UTF-8"
LANG="en_US.UTF-8"
%post
dnf install -y epel-release
dnf groupinstall -y xfce
dnf install -y python3-pip xorg-x11-xauth
pip3 install ts
dnf install -y https://yum.osc.edu/ondemand/latest/compute/el8Server/x86_64/python3-websockify-0.10.0-1.el8.noarch.rpm
dnf install -y https://yum.osc.edu/ondemand/latest/compute/el8Server/x86_64/turbovnc-2.2.5-1.el8.x86_64.rpm
dnf clean all
chown root:root /opt/TurboVNC/etc/turbovncserver-security.conf
rm -rf /var/cache/dnf/*

0 comments on commit 7f6862e

Please sign in to comment.