Rdrp 787 test export

[zorge69]

Pull Request submission

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Closes or fixes

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Code

• Code runs The code runs on my machine and/or CDSW
• Conflicts resolved There are no conflicts (I have performed a rebase if necessary)
• Requirements My/our code functions according to the requirements of the ticket
• Dependencies I have updated the environment yaml so it includes any new libraries I have used
• Configuration file updated any high level parameters that the user may interact with have been put into the config file (and imported to the script)
• Clean Code
  • Code is as PEP 8 compliant as I can humanly make it
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  • Code adheres to DRY
• Type hints All new functions have type hints

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Testing

• Unit tests Unit tests have been created and are passing or a new ticket to create tests has been created

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Peer Review Section

• All requirements install from (updated) requirements.txt
• Documentation has been created and is clear - check the working document
• Doctrings (Google format) have been created and accurately describe the function's functionality
• Unit tests pass, or if not present a new ticket to create tests has been created
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• I recommend merging this request.

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  that it is likely to interact with?)
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  works correctly?)
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[github-actions]

Detailed Coverage Report

File	Stmts	Miss	Cover	Missing
src
__init__.py	0	0	100%
src/aggregation
__init__.py	0	0	100%
aggregation_main.py	0	0	100%
src/construction
__init__.py	0	0	100%
all_data_construction.py	48	48	0%	1–2, 4–5, 7, 9, 17, 23, 46–47, 50, 55–56, 60–62, 66–67, 70, 77–79, 84, 87–91, 93, 98–99, 104–105, 108–110, 114, 118–121, 126–127, 129, 134–135, 139, 141
construction_helpers.py	104	14	86%	31–42, 237, 304
construction_main.py	27	27	0%	2–3, 5, 7, 11–12, 15, 18, 54–57, 64, 68–71, 74, 78–81, 84, 89–91, 93
construction_read_validate.py	34	34	0%	2–3, 5, 8, 11, 16, 18, 21, 46–49, 51–52, 55–56, 59, 66–68, 72–73, 79, 82, 101–103, 105–106, 109, 116–117, 122, 129
construction_validation.py	102	9	91%	83, 86, 113, 121–122, 127, 138, 168, 218
postcode_construction.py	21	21	0%	1–2, 4–6, 9, 26, 29, 32, 37, 40–41, 44, 47–49, 51, 55, 59, 62–63
src/estimation
__init__.py	0	0	100%
apply_weights.py	19	2	89%	41–42
calculate_weights.py	52	0	100%
estimation_main.py	24	24	0%	2–5, 7–8, 10, 13, 32, 38, 41, 44–45, 47–56, 58
src/freezing
__init__.py	0	0	100%
freezing_apply_changes.py	73	21	71%	36–39, 42–43, 46–48, 51–54, 58, 66–69, 73–74, 76
freezing_compare.py	72	24	66%	111–112, 160–161, 187, 190–192, 195–197, 201–203, 205–207, 209–210, 242, 267, 270, 273, 276
freezing_main.py	49	49	0%	1–4, 6, 8–12, 15, 18, 44, 47, 50–51, 53–57, 59, 68, 71–73, 76–77, 81–83, 88–89, 91–92, 95–98, 101, 105, 108, 119–122, 124–126
freezing_utils.py	11	0	100%
src/imputation
MoR.py	141	5	96%	45–46, 94, 313, 463
__init__.py	0	0	100%
apportionment.py	36	10	72%	124, 126, 141, 143, 145, 157–159, 162, 164
expansion_imputation.py	37	30	18%	23–24, 26–27, 30, 33–35, 39, 42, 44, 47–48, 50, 53, 56, 76–78, 82, 85, 88, 91, 97, 102, 105, 107, 113, 116, 120
imputation_helpers.py	119	50	57%	39, 52–55, 58–59, 61–62, 64–65, 67–68, 70–71, 73–74, 76–77, 79, 88, 90–91, 93–94, 263, 265, 267–268, 270, 274, 295, 298, 302, 305–306, 308, 393, 395–396, 399, 411–412, 414, 416, 432–433, 436–437, 439
imputation_main.py	75	75	0%	2–6, 8–17, 20, 23, 57, 60, 64–66, 69–70, 73–74, 77, 79, 84, 87–88, 91, 94–95, 98, 100, 103, 106, 110–111, 113, 117–118, 121, 124–126, 128, 132, 135–136, 138–142, 145–146, 151–153, 155–159, 162, 165, 168–173, 175
impute_civ_def.py	98	47	52%	164, 167, 197, 199–200, 203–204, 207–209, 214–215, 217, 220, 222–225, 227, 229, 234–235, 237, 240, 242–244, 247, 249–250, 252–253, 255–256, 269, 272–276, 278–279, 282–283, 285–286, 288
manual_imputation.py	19	19	0%	1–2, 4, 6, 9–10, 28–29, 33, 35, 37, 44, 59, 61–62, 64–65, 67–68
sf_expansion.py	71	58	18%	24, 27, 30–31, 34–35, 38, 41, 44–45, 48, 50, 57–58, 61, 66–67, 70, 72, 75–76, 78, 80, 83, 87, 89, 100, 103, 107, 109–110, 112, 114, 117, 120, 129, 132, 135, 144, 147, 149, 155, 161, 173, 176, 181–182, 184, 192–193, 196, 200, 204, 207, 215, 217, 221, 223
short_to_long.py	21	21	0%	1, 3–4, 7, 20, 23, 25, 32–33, 35, 37–38, 40–41, 43–45, 47, 49, 53, 55
tmi_imputation.py	188	122	35%	105, 107, 113–115, 119, 125, 128, 130, 135, 140, 145, 266, 269, 271, 274, 278, 282, 304–305, 308, 311–312, 315, 318–319, 322, 324–325, 327, 329, 332–333, 335, 337, 340, 343–344, 346, 349–351, 353–356, 358, 374, 376, 383, 385–386, 388–389, 391, 393, 395, 397, 400, 403–404, 407, 409, 411, 429–430, 432, 434–435, 437–439, 441–442, 445, 447–448, 451, 453–454, 472, 474, 477–479, 481, 483–484, 486–487, 490, 492–493, 496, 498, 500–501, 521, 525, 528–529, 532–533, 536, 539, 541, 546, 548, 553, 555, 562–563, 566, 569–570, 572, 575, 577, 579, 584, 586–587
src/mapping
__init__.py	0	0	100%
cellno_mapping.py	17	4	76%	49–51, 53
itl_mapping.py	10	0	100%
mapping_helpers.py	55	5	90%	24–27, 69
mapping_main.py	47	47	0%	2–5, 7–13, 15, 18, 45, 50, 59, 68, 75, 78, 85, 88–90, 97, 99, 102, 104–106, 109, 112, 117–118, 121–123, 125–127, 130–131, 133–135, 138, 141, 144
pg_conversion.py	40	8	80%	52, 55, 58, 122, 125, 128, 162–163
ultfoc_mapping.py	34	4	88%	49–51, 95
src/northern_ireland
__init__.py	0	0	100%
ni_headcount_fte.py	29	29	0%	2–4, 6, 8, 11, 25, 27, 29, 31, 33, 35, 37, 40, 55, 57–59, 61, 63–64, 66–67, 69, 72, 81, 83–84, 86
ni_main.py	17	17	0%	3–8, 10, 13, 35–36, 44–46, 54, 56–57, 59
ni_staging.py	35	35	0%	3–7, 9, 11, 14, 22, 25, 27–29, 31, 34, 40, 44, 46, 49, 80–81, 84, 89, 93, 96, 99–104, 107–108, 110, 112
src/outlier_detection
__init__.py	0	0	100%
auto_outliers.py	81	0	100%
manual_outliers.py	16	0	100%
outlier_main.py	40	40	0%	2–5, 7–8, 10, 13, 44, 46–48, 50–51, 54, 57, 60–64, 67–68, 70, 75–76, 79, 84–87, 90–94, 96, 99, 101, 103
src/outputs
__init__.py	0	0	100%
export_files.py	89	89	0%	5–11, 13–14, 18, 24, 42, 44, 51, 56, 63, 68, 71, 98, 104, 107, 114, 116, 119, 125, 127–128, 131–135, 138–139, 142, 153–155, 157, 160, 173, 175–176, 178, 181, 201, 204, 207–208, 215, 219, 222–224, 227, 229, 231, 233–234, 236, 239–243, 245–246, 248, 251–253, 256, 259, 262, 276, 279–280, 288, 291, 293, 295, 305, 307–309, 318, 320, 323–324
form_output_prep.py	18	13	27%	25–27, 29–30, 34, 36–37, 39, 41, 43, 47, 49
frozen_group.py	45	45	0%	3–4, 6–7, 9–11, 13, 16, 47, 49–52, 55, 73, 125, 136, 163, 166–170, 172, 174, 177, 180–181, 183, 186, 189, 194–195, 198–199, 202, 205–207, 210–213, 215
gb_sas.py	25	25	0%	2–5, 7–9, 11, 14, 32, 35, 40, 43, 46, 49, 54, 57, 60–62, 65–68, 70
intram_by_civil_defence.py	23	23	0%	2–6, 8, 11, 30, 32–33, 36–37, 39, 42, 47, 50, 53–55, 58–61
intram_by_itl.py	55	16	70%	46–50, 54, 146, 149, 152–154, 157–158, 161–162, 172
intram_by_pg.py	31	0	100%
intram_by_sic.py	35	35	0%	2–5, 7, 10, 32–33, 36–37, 40–41, 43, 46–48, 53, 69–73, 75, 78, 81, 84, 87, 90–91, 94–97, 100, 102
intram_totals.py	16	16	0%	3–4, 6–7, 9, 12, 31–32, 35, 38, 41–42, 44–47
long_form.py	19	19	0%	2–5, 7–9, 11, 14, 31, 34, 37, 40–42, 44–47
manifest_output.py	78	78	0%	1–4, 8, 11–12, 15, 33, 48–51, 54–55, 59–60, 65–66, 68, 71–75, 78–84, 86, 104–105, 110, 112–113, 118, 121, 123, 125, 127, 131, 141, 146–147, 153, 156–157, 159–160, 166–169, 174, 181, 183, 188, 190–192, 194–195, 197–198, 200–203, 205, 208, 210, 216–217, 220–221
map_output_cols.py	38	7	81%	150–151, 153, 155, 158, 161, 163
ni_sas.py	21	21	0%	2–8, 10, 13, 28, 31, 34, 37, 42, 45–47, 50–53
outputs_helpers.py	17	0	100%
outputs_main.py	83	83	0%	3–4, 7, 10–22, 24, 27, 53, 58–60, 66, 69, 72–74, 80, 83–84, 87–89, 96, 99–101, 104, 107–109, 111–112, 118, 121–123, 133, 136–138, 142–143, 153, 156–158, 166, 169–171, 175–176, 185, 188–190, 198, 201–203, 210, 213–215, 223, 226–228, 230–232, 234
short_form.py	36	15	58%	78, 85, 87, 105, 108, 111, 114, 117, 120–122, 124–127
tau.py	27	27	0%	2–8, 10, 13, 33, 37, 40, 43, 46, 49, 54, 57, 59–60, 63–65, 68–71, 73
total_fte.py	14	14	0%	2–5, 8, 11, 24, 26–27, 33, 38–41
src/site_apportionment
__init__.py	0	0	100%
output_status_filtered.py	28	17	39%	24, 26, 30–31, 33–34, 36, 43–44, 72, 75, 77, 79–82, 84
site_apportionment.py	124	27	78%	97, 99–105, 458, 460–461, 504, 508, 510, 513, 516, 519, 522, 534, 537, 540, 543, 546, 549, 552, 555, 557
site_apportionment_main.py	25	25	0%	2–5, 7–8, 13, 16, 41, 43, 46–47, 50–51, 53–54, 57, 62–67, 69–70
src/staging
__init__.py	0	0	100%
postcode_validation.py	56	3	94%	131–132, 220
spp_parser.py	14	0	100%
spp_snapshot_processing.py	34	0	100%
staging_helpers.py	86	25	70%	113, 116, 119, 122, 125, 128–129, 132, 135, 138, 171, 174, 176, 179–180, 183, 186, 188–189, 192, 196–197, 199, 203, 209
staging_main.py	107	107	0%	3–6, 8, 10–11, 15, 18, 66–68, 71, 73–76, 78–79, 83, 85–86, 89, 92, 95–96, 98–99, 104–106, 110–113, 115–116, 122, 127–129, 131–132, 135, 148–150, 155, 158, 162, 164, 166–168, 171, 175, 177, 179–183, 186, 189, 191–192, 195, 197–202, 205, 209–210, 213–217, 219, 222, 231, 239, 249–250, 252–257, 260–261, 263, 266–271, 274–275, 277, 280, 292
validation.py	135	44	67%	33, 36, 85–86, 97, 119, 132–133, 138, 142, 150–151, 157–158, 197–198, 204, 206, 209, 211, 292, 294–295, 298–299, 302–303, 306, 309–310, 313, 315, 317–318, 332, 334–340, 343, 346
src/utils
__init__.py	0	0	100%
breakdown_validation.py	130	45	65%	29, 186–188, 190–194, 196, 198, 201–202, 208–209, 212, 215, 217, 220, 222, 234–237, 240–243, 259–260, 265, 308–309, 311, 317–318, 360–363, 365–368, 371
config.py	149	2	98%	157–158
defence.py	20	0	100%
helpers.py	63	18	71%	19–20, 24–25, 27, 133–136, 138–139, 142–144, 153, 155–156, 214
local_file_mods.py	118	45	61%	48–54, 99, 149–151, 200–204, 215–216, 227, 238, 249–250, 252, 263–264, 275–276, 285, 293, 304, 306–307, 309–310, 314–316, 320, 334–335, 338–339, 341, 358, 363
path_helpers.py	127	8	93%	56, 269, 271, 273–274, 276–277, 279
postcode_reduction_helper.py	38	38	0%	11, 13–14, 16, 19, 22, 25, 27–28, 30–31, 34–35, 38, 40–41, 43–44, 47, 60, 62, 65, 68, 71–72, 74–75, 77, 80, 95, 97, 100–101, 104–105, 107, 109–110
s3_mods.py	127	127	0%	21–22, 26–27, 31, 41, 45–47, 51, 65, 67–68, 71–74, 76–77, 80, 91, 94, 99, 102, 105, 108, 119–120, 122, 125, 139, 143–144, 146, 149, 159, 166, 169, 171, 174, 176, 179, 190–191, 193, 196, 204–205, 208, 217–218, 222–225, 228, 239–240, 243–244, 247, 252, 255, 266–267, 269–272, 274–275, 278, 284, 287, 300, 303, 306, 308, 311, 317, 320, 323, 326, 329, 337–339, 341, 344, 348–349, 351, 354, 383, 387, 389, 396, 399, 404–406, 413, 416, 431, 433–434, 436–437, 441, 443, 445, 448, 450–452, 454, 457, 467, 470–471, 474, 477, 479–480, 483–485
singleton_boto.py	20	20	0%	4–5, 8–10, 12–13, 15–19, 23–25, 27–31
TOTAL	3933	1976	49%

Summary of tests

Tests	Skipped	Failures	Errors	Time
247	2 💤	0 ❌	0 🔥	3.381s ⏱️

[AnneONS]

A few comments for further development, but I have tested everything works.
I can't say I've gone through all the code to understand it though.

[AnneONS]

Again, for future development- how about doing try /except for nicer failure?

[AnneONS]

I tested this and rd_move_file when the file already exists in the destination. In this case, the return is NOT True.
So for further work, it would be useful to put this in docstrings.