RDRP 1019, 1021, 675 #1937
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| name: Run pytest on pull request to develop | |
| # runs on every pull request to develop | |
| on: | |
| pull_request: | |
| branches: | |
| - develop | |
| # runs on version 20.04 of ubuntu | |
| jobs: | |
| pytest-coverage-comment: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| # 1) Checkout the code | |
| - uses: actions/checkout@v3 | |
| # 2) Removing PyDoop from the requirements.txt | |
| - name: Remove pydoop requirements.txt | |
| shell: bash -l {0} | |
| run: | | |
| awk '!/pydoop.*/' requirements.txt> temp && mv temp requirements.txt | |
| # 3) Set up Python | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| # 4) Install dependencies from requirements.txt | |
| - name: Install dependencies | |
| run: pip install -r requirements.txt | |
| # 5) Run pytest to run all tests in the tests folder! | |
| - name: Use coverage to run pytest | |
| # Specify shell to run the command in | |
| working-directory: ${{ github.workspace }} | |
| shell: bash -l {0} | |
| run: | | |
| coverage run --branch --source=./src --omit=src/utils/hdfs_mods.py,src/utils/wrappers.py,src/utils/runlog.py,src/_version.py,src/pipeline.py,src/*_main.py \ | |
| -m pytest -ra ./tests --junitxml=junit_result.xml --ignore=tests/test_utils/test_hdfs_mods.py && coverage xml \ | |
| -o python_coverage.xml && coverage report -m --fail-under=10 | |
| # 6) Get the coverage report in to the pull request comments | |
| - name: Pytest coverage comment | |
| uses: MishaKav/pytest-coverage-comment@main | |
| with: | |
| title: Detailed Coverage Report | |
| badge-title: Percentage Coverage for this PR | |
| pytest-xml-coverage-path: ./python_coverage.xml | |
| coverage-path-prefix: src/ | |
| junitxml-title: Summary of tests | |
| junitxml-path: ./junit_result.xml |