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M2 docstring#2

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pckroon wants to merge 6 commits intoOLaprevote:masterOLaprevote/vermouth-martinize:masterfrom marrink-lab:m2_docstringmarrink-lab/vermouth-martinize:m2_docstringCopy head branch name to clipboard

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Commits on Mar 2, 2022

• Upgrade sphinx to latest, and fix doc issues

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• Create martinize2 python function

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• Move martinize2 into a vermouth function

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• Replace open with deferred_open

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• Answer Sphinx's three riddles to appease it

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• Remove run_pylint in favour of just pylint

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