Fix indexing issues due to pos

OHNLP · Oct 7, 2024 · 8ffc4ea · 8ffc4ea
1 parent a857027
commit 8ffc4ea
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Showing 2 changed files with 7 additions and 3 deletions.
diff --git a/pom.xml b/pom.xml
@@ -6,7 +6,7 @@
 
     <groupId>org.ohnlp.medtagger</groupId>
     <artifactId>medtagger</artifactId>
-    <version>1.0.79</version>
+    <version>1.0.80</version>
     <description>The MedTagger biomedical information extraction pipeline</description>
 
 

diff --git a/src/main/java/org/ohnlp/medtagger/sectag/RulebasedSectionAnnotator.java b/src/main/java/org/ohnlp/medtagger/sectag/RulebasedSectionAnnotator.java
@@ -126,8 +126,12 @@ private Segment SecIndicator(Sentence sen, JCas jcas) {
 		String str=sen.getCoveredText();
 		Segment cSeg=null;
 		int pos=str.indexOf(":");
-//		if(pos < 0 || pos >=100) return null;
-		String secStr=str.substring(0,pos);
+		String secStr;
+		if(pos < 0 || pos >=100)
+			secStr=str;
+		else {
+			secStr=str.substring(0,pos);
+		}
 		if(sectionMap.containsKey(lvg.getNorm(secStr))){
 			sen.removeFromIndexes(jcas);
 		    String cSegment=sectionMap.get(lvg.getNorm(secStr));