Merge pull request #50 from OHDSI/develop

Release v0.5.6
OHDSI · Dec 18, 2023 · 3033804 · 3033804
2 parents 4a3af3a + 9be6037
commit 3033804
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: ResultModelManager
 Title: Result Model Manager (RMM) for OHDSI packages
-Version: 0.5.5
+Version: 0.5.6
 Authors@R:
     person("Jamie", "Gilbert", , "[email protected]", role = c("aut", "cre"))
 Description: Database data model management utilities for OHDSI packages.

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,11 @@
+
+# ResultModelManager 0.5.6
+
+Changes:
+
+1. For PooledConnectionHandler, added check to see if java stack size is set on unix systems before connecting
+stop overflow errors on rconnect  platforms. Note that this solution will fail if RJava is called before the connection
+
 # ResultModelManager 0.5.5
 
 Bug Fixes:

diff --git a/R/PooledConnectionHandler.R b/R/PooledConnectionHandler.R
@@ -55,6 +55,12 @@ requiredPackage <- function(packageName) {
   },
   "jdbc" = function(cd) {
     ParallelLogger::logInfo("Using DatabaseConnector jdbc driver.")
+    # Set java stack size on linux to workaround overflow problem
+    if (is.null(getOption("java.parameters")) & .Platform$OS.type == "linux") {
+      ParallelLogger::logInfo("Unix system detected and no java.parameters option set. Fixing stack with -Xss5m")
+      options(java.parameters = "-Xss5m")
+    }
+
     list(
       drv = DatabaseConnector::DatabaseConnectorDriver(),
       dbms = cd$dbms,

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/articles/CreatingMigrations.html b/docs/articles/CreatingMigrations.html
diff --git a/docs/articles/ExampleProject.html b/docs/articles/ExampleProject.html
diff --git a/docs/articles/PackageDesign.html b/docs/articles/PackageDesign.html
diff --git a/docs/articles/UploadFunctionality.html b/docs/articles/UploadFunctionality.html
diff --git a/docs/articles/UsingAnExportManager.html b/docs/articles/UsingAnExportManager.html
diff --git a/docs/articles/UsingConnectionHandlers.html b/docs/articles/UsingConnectionHandlers.html
diff --git a/docs/articles/UsingQueryNamespaces.html b/docs/articles/UsingQueryNamespaces.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -9,5 +9,5 @@ articles:
   UsingAnExportManager: UsingAnExportManager.html
   UsingConnectionHandlers: UsingConnectionHandlers.html
   UsingQueryNamespaces: UsingQueryNamespaces.html
-last_built: 2023-12-15T00:28Z
+last_built: 2023-12-18T17:00Z
 
diff --git a/docs/pull_request_template.html b/docs/pull_request_template.html
diff --git a/docs/reference/ConnectionHandler.html b/docs/reference/ConnectionHandler.html
diff --git a/docs/reference/DataMigrationManager.html b/docs/reference/DataMigrationManager.html
diff --git a/docs/reference/PooledConnectionHandler.html b/docs/reference/PooledConnectionHandler.html
diff --git a/docs/reference/QueryNamespace.html b/docs/reference/QueryNamespace.html
diff --git a/docs/reference/ResultExportManager.html b/docs/reference/ResultExportManager.html
diff --git a/docs/reference/ResultModelManager-package.html b/docs/reference/ResultModelManager-package.html
diff --git a/docs/reference/createQueryNamespace.html b/docs/reference/createQueryNamespace.html
diff --git a/docs/reference/createResultExportManager.html b/docs/reference/createResultExportManager.html
diff --git a/docs/reference/deleteAllRowsForDatabaseId.html b/docs/reference/deleteAllRowsForDatabaseId.html
diff --git a/docs/reference/deleteAllRowsForPrimaryKey.html b/docs/reference/deleteAllRowsForPrimaryKey.html
diff --git a/docs/reference/generateSqlSchema.html b/docs/reference/generateSqlSchema.html
diff --git a/docs/reference/grantTablePermissions.html b/docs/reference/grantTablePermissions.html
diff --git a/docs/reference/index.html b/docs/reference/index.html