Regenerating documentation

OHDSI · Mar 19, 2021 · 789cbd6 · 789cbd6
1 parent 742f8ad
commit 789cbd6
Show file tree

Hide file tree

Showing 52 changed files with 923 additions and 431 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -2,7 +2,7 @@ Package: MethodEvaluation
 Type: Package
 Title: Package for Evaluation of Estimation Methods
 Version: 2.1.0
-Date: 2020-12-08
+Date: 2021-03-19
 Authors@R: c(
   person("Martijn", "Schuemie", , "[email protected]", role = c("aut", "cre"))
   )

diff --git a/NAMESPACE b/NAMESPACE
@@ -29,6 +29,7 @@ importFrom(stats,qnorm)
 importFrom(stats,quantile)
 importFrom(stats,rexp)
 importFrom(stats,rpois)
+importFrom(utils,head)
 importFrom(utils,install.packages)
 importFrom(utils,menu)
 importFrom(utils,read.csv)

diff --git a/R/CreateReferenceSetCohorts.R b/R/CreateReferenceSetCohorts.R
@@ -1,4 +1,4 @@
-# Copyright 2020 Observational Health Data Sciences and Informatics
+# Copyright 2021 Observational Health Data Sciences and Informatics
 #
 # This file is part of MethodEvaluation
 # 

diff --git a/R/Mdrr.R b/R/Mdrr.R
@@ -1,6 +1,6 @@
 # @file Mdrr.R
 #
-# Copyright 2020 Observational Health Data Sciences and Informatics
+# Copyright 2021 Observational Health Data Sciences and Informatics
 #
 # This file is part of MethodEvaluation
 # 

diff --git a/R/MethodEvaluation.R b/R/MethodEvaluation.R
@@ -1,6 +1,6 @@
 # @file MethodEvaluation.R
 #
-# Copyright 2020 Observational Health Data Sciences and Informatics
+# Copyright 2021 Observational Health Data Sciences and Informatics
 #
 # This file is part of MethodEvaluation
 # 
@@ -22,7 +22,7 @@
 #' @importFrom SqlRender loadRenderTranslateSql translateSql
 #' @importFrom grDevices rgb
 #' @importFrom stats aggregate coef pnorm predict qnorm quantile rexp rpois
-#' @importFrom utils write.csv install.packages menu read.csv
+#' @importFrom utils write.csv install.packages menu read.csv head
 #' @importFrom methods is
 #' @importFrom rlang .data
 #' @import Cyclops

diff --git a/R/Metrics.R b/R/Metrics.R
@@ -1,6 +1,6 @@
 # @file Metrics.R
 #
-# Copyright 2020 Observational Health Data Sciences and Informatics
+# Copyright 2021 Observational Health Data Sciences and Informatics
 #
 # This file is part of MethodEvaluation
 # 

diff --git a/R/Plots.R b/R/Plots.R
@@ -1,6 +1,6 @@
 # @file Plots.R
 #
-# Copyright 2020 Observational Health Data Sciences and Informatics
+# Copyright 2021 Observational Health Data Sciences and Informatics
 #
 # This file is part of MethodEvaluation
 # 

diff --git a/R/PositiveControlSynthesis.R b/R/PositiveControlSynthesis.R
@@ -1,4 +1,4 @@
-# Copyright 2020 Observational Health Data Sciences and Informatics
+# Copyright 2021 Observational Health Data Sciences and Informatics
 #
 # This file is part of MethodEvaluation
 #

diff --git a/R/ShinyApps.R b/R/ShinyApps.R
@@ -1,4 +1,4 @@
-# Copyright 2020 Observational Health Data Sciences and Informatics
+# Copyright 2021 Observational Health Data Sciences and Informatics
 #
 # This file is part of MethodEvaluation
 # 

diff --git a/R/SignalInjection.R b/R/SignalInjection.R
@@ -1,6 +1,6 @@
 # @file SignalInjection.R
 #
-# Copyright 2020 Observational Health Data Sciences and Informatics
+# Copyright 2021 Observational Health Data Sciences and Informatics
 #
 # This file is part of MethodEvaluation
 #

diff --git a/README.md b/README.md
@@ -33,9 +33,8 @@ Installation
 2. In R, use the following commands to download and install MethodEvaluation:
 
   ```r
-  install.packages("drat")
-  drat::addRepo("OHDSI")
-  install.packages("MethodEvaluation")
+  install.packages("remotes")
+  remotes::install_github("ohdsi/MethodEvaluation")
   ```
 
 User Documentation
@@ -66,7 +65,7 @@ MethodEvaluation is being developed in R Studio.
 
 ### Development status
 
-Beta
+Ready for use.
 
 Acknowledgements
 ================

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/OhdsiMethodsBenchmark.html b/docs/articles/OhdsiMethodsBenchmark.html
diff --git a/docs/articles/OhdsiMethodsBenchmark_files/header-attrs-2.6/header-attrs.js b/docs/articles/OhdsiMethodsBenchmark_files/header-attrs-2.6/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.css b/docs/pkgdown.css
@@ -244,14 +244,14 @@ nav[data-toggle='toc'] .nav .nav > .active:focus > a {
 
 .ref-index th {font-weight: normal;}
 
-.ref-index td {vertical-align: top;}
+.ref-index td {vertical-align: top; min-width: 100px}
 .ref-index .icon {width: 40px;}
 .ref-index .alias {width: 40%;}
 .ref-index-icons .alias {width: calc(40% - 40px);}
 .ref-index .title {width: 60%;}
 
 .ref-arguments th {text-align: right; padding-right: 10px;}
-.ref-arguments th, .ref-arguments td {vertical-align: top;}
+.ref-arguments th, .ref-arguments td {vertical-align: top; min-width: 100px}
 .ref-arguments .name {width: 20%;}
 .ref-arguments .desc {width: 80%;}
 

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -1,7 +1,7 @@
-pandoc: 2.7.3
-pkgdown: 1.5.1
+pandoc: '2.11'
+pkgdown: 1.6.1
 pkgdown_sha: ~
 articles:
   OhdsiMethodsBenchmark: OhdsiMethodsBenchmark.html
-last_built: 2020-06-08T07:01Z
+last_built: 2021-03-19T10:59Z