Addign OhdsiShinyModules to HADES

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: Hades
 Type: Package
 Title: Health Analytics Data-to-Evidence Suite
-Version: 1.6.0
-Date: 2022-12-05
+Version: 1.7.0
+Date: 2022-12-12
 Authors@R: c(
   person("Martijn", "Schuemie", , "[email protected]", role = c("aut", "cre")),
   person("Observational Health Data Science and Informatics", role = c("cph"))
@@ -40,7 +40,8 @@ Imports:
   MethodEvaluation,
   OhdsiSharing,
   Hydra,
-  IterativeHardThresholding
+  IterativeHardThresholding,
+  OhdsiShinyModules
 Remotes:
   ohdsi/BigKnn,
   ohdsi/ROhdsiWebApi,
@@ -61,7 +62,8 @@ Remotes:
   ohdsi/Eunomia,
   ohdsi/CohortGenerator,
   ohdsi/DeepPatientLevelPrediction,
-  ohdsi/CohortExplorer
+  ohdsi/CohortExplorer,
+  ohdsi/OhdsiShinyModules
 LazyData: false
 RoxygenNote: 7.2.0
 Encoding: UTF-8

NEWS.md

@@ -1,3 +1,10 @@
+HADES 1.7.0
+===========
+
+Changes
+
+- Adding OhdsiShinyModules to HADES
+
 HADES 1.6.0
 ===========
 

Rmd/packageStatuses.Rmd

@@ -38,6 +38,7 @@ The table below lists, for each of the HADES packages, the following details:
 | [IterativeHardThresholding](https://github.com/OHDSI/IterativeHardThresholding) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/IterativeHardThresholding?label=%20)](https://ohdsi.github.io/IterativeHardThresholding/) | Marc Suchard | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/IterativeHardThresholding?label=%20)](https://github.com/OHDSI/IterativeHardThresholding/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/IterativeHardThresholding?label=%20)](https://github.com/OHDSI/IterativeHardThresholding/pulls) | [![Build Status](https://github.com/OHDSI/IterativeHardThresholding/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/IterativeHardThresholding/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/IterativeHardThresholding/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/IterativeHardThresholding?branch=main) |
 | [MethodEvaluation](https://github.com/OHDSI/MethodEvaluation) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/MethodEvaluation?label=%20)](https://ohdsi.github.io/MethodEvaluation/) | Martijn Schuemie  | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/MethodEvaluation?label=%20)](https://github.com/OHDSI/MethodEvaluation/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/MethodEvaluation?label=%20)](https://github.com/OHDSI/MethodEvaluation/pulls) | [![Build Status](https://github.com/OHDSI/MethodEvaluation/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/MethodEvaluation/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/MethodEvaluation/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/MethodEvaluation?branch=main) |
 | [OhdsiSharing](https://github.com/OHDSI/OhdsiSharing) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/OhdsiSharing?label=%20)](https://ohdsi.github.io/OhdsiSharing/) | Lee Evans | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/OhdsiSharing?label=%20)](https://github.com/OHDSI/OhdsiSharing/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/OhdsiSharing?label=%20)](https://github.com/OHDSI/OhdsiSharing/pulls) | [![Build Status](https://github.com/OHDSI/OhdsiSharing/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/OhdsiSharing/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/OhdsiSharing/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/OhdsiSharing?branch=main) |
+| [OhdsiShinyModules](https://github.com/OHDSI/OhdsiShinyModules) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/OhdsiShinyModules?label=%20)](https://ohdsi.github.io/OhdsiShinyModules/) | Jenna Reps | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/OhdsiShinyModules?label=%20)](https://github.com/OHDSI/OhdsiShinyModules/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/OhdsiShinyModules?label=%20)](https://github.com/OHDSI/OhdsiShinyModules/pulls) | [![Build Status](https://github.com/OHDSI/OhdsiShinyModules/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/OhdsiShinyModules/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/OhdsiShinyModules/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/OhdsiShinyModules?branch=main) |
 | [ParallelLogger](https://github.com/OHDSI/ParallelLogger) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/ParallelLogger?label=%20)](https://ohdsi.github.io/ParallelLogger/) | Martijn Schuemie  | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/ParallelLogger?label=%20)](https://github.com/OHDSI/ParallelLogger/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/ParallelLogger?label=%20)](https://github.com/OHDSI/ParallelLogger/pulls) | [![Build Status](https://github.com/OHDSI/ParallelLogger/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/ParallelLogger/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/ParallelLogger/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/ParallelLogger?branch=main) |
 | [PatientLevelPrediction](https://github.com/OHDSI/PatientLevelPrediction) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/PatientLevelPrediction?label=%20)](https://ohdsi.github.io/PatientLevelPrediction/) | Jenna Reps & Peter Rijnbeek | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/PatientLevelPrediction?label=%20)](https://github.com/OHDSI/PatientLevelPrediction/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/PatientLevelPrediction?label=%20)](https://github.com/OHDSI/PatientLevelPrediction/pulls) | [![Build Status](https://github.com/OHDSI/PatientLevelPrediction/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/PatientLevelPrediction/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/PatientLevelPrediction/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/PatientLevelPrediction?branch=main) |
 | [PhenotypeLibrary](https://github.com/OHDSI/PhenotypeLibrary) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/PhenotypeLibrary?label=%20)](https://ohdsi.github.io/PhenotypeLibrary/) | Gowtham Rao | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/PhenotypeLibrary?label=%20)](https://github.com/OHDSI/PhenotypeLibrary/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/PhenotypeLibrary?label=%20)](https://github.com/OHDSI/PhenotypeLibrary/pulls) | [![Build Status](https://github.com/OHDSI/PhenotypeLibrary/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/PhenotypeLibrary/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/PhenotypeLibrary/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/PhenotypeLibrary?branch=main) |

Rmd/packages.Rmd

@@ -48,6 +48,7 @@ Below are the packages included in HADES. For each package a link is provided wi
 <li><h4><i class="fas  fa-cube "></i> <a href="https://ohdsi.github.io/Hydra">Hydra</a></h4>Hydrating package skeletons into executable R study packages based on specifications in JSON format.</br><a href="https://ohdsi.github.io/Hydra">Learn more...</a></li>
 <li><h4><i class="fas  fa-cube "></i> <a href="https://ohdsi.github.io/IterativeHardThresholding">IterativeHardThresholding</a></h4>Performing L0-based regressions using Cyclops</br><a href="https://ohdsi.github.io/IterativeHardThresholding">Learn more...</a></li>
 <li><h4><i class="fas  fa-cube "></i> <a href="https://ohdsi.github.io/OhdsiSharing">OhdsiSharing</a></h4>Securely sharing (large) files between OHDSI collaborators.</br><a href="https://ohdsi.github.io/OhdsiSharing">Learn more...</a></li>
+<li><h4><i class="fas  fa-cube "></i> <a href="https://ohdsi.github.io/OhdsiShinyModules">OhdsiShinyModules</a></h4>Contains shiny modules that can be used within shiny result interfaces</br><a href="https://ohdsi.github.io/OhdsiShinyModules">Learn more...</a></li>
 <li><h4><i class="fas  fa-cube "></i> <a href="https://ohdsi.github.io/ParallelLogger">ParallelLogger</a></h4>Support for parallel computation with logging to console, disk, or e-mail.</br><a href="https://ohdsi.github.io/ParallelLogger">Learn more...</a></li>
 <li><h4><i class="fas  fa-cube "></i> <a href="https://ohdsi.github.io/ROhdsiWebApi">ROhdsiWebApi</a></h4>Interact with OHDSI WebAPI web services.</br><a href="https://ohdsi.github.io/ROhdsiWebApi">Learn more...</a></li>
 <li><h4><i class="fas  fa-cube "></i> <a href="https://ohdsi.github.io/SqlRender">SqlRender</a></h4>Generate SQL on the fly for the various SQL dialects.</br><a href="https://ohdsi.github.io/SqlRender">Learn more...</a></li>

Rmd/support.Rmd

@@ -54,6 +54,8 @@ Bug reports should be files using the issue tracker of the misbehaving package:
 
 - [OhdsiSharing issue tracker](https://github.com/OHDSI/OhdsiSharing/issues)
 
+- [OhdsiShinyModules issue tracker](https://github.com/OHDSI/OhdsiShinyModules/issues)
+
 - [ParallelLogger issue tracker](https://github.com/OHDSI/ParallelLogger/issues)
 
 - [PatientLevelPrediction issue tracker](https://github.com/OHDSI/PatientLevelPrediction/issues)

docs/developmentRoadmap.html

@@ -485,6 +485,8 @@ <h1>Package milestones</h1>
 <script>addMileStones('MethodEvaluation')</script>
 <p id='OhdsiSharing'/>
 <script>addMileStones('OhdsiSharing')</script>
+<p id='OhdsiShinyModules'/>
+<script>addMileStones('OhdsiShinyModules')</script>
 <p id='ParallelLogger'/>
 <script>addMileStones('ParallelLogger')</script>
 <p id='PatientLevelPrediction'/>

docs/packageStatuses.html

@@ -600,6 +600,16 @@ <h1 class="title toc-ignore">Package statuses</h1>
 <td align="center"><a href="https://codecov.io/github/OHDSI/OhdsiSharing?branch=main"><img src="https://codecov.io/github/OHDSI/OhdsiSharing/coverage.svg?branch=main" alt="codecov.io" /></a></td>
 </tr>
 <tr class="odd">
+<td align="left"><a href="https://github.com/OHDSI/OhdsiShinyModules">OhdsiShinyModules</a></td>
+<td align="center"><a href="https://ohdsi.github.io/OhdsiShinyModules/"><img src="https://img.shields.io/github/r-package/v/ohdsi/OhdsiShinyModules?label=%20" alt="Version" /></a></td>
+<td align="left">Jenna Reps</td>
+<td align="center">GitHub</td>
+<td align="center"><a href="https://github.com/OHDSI/OhdsiShinyModules/issues"><img src="https://img.shields.io/github/issues-raw/OHDSI/OhdsiShinyModules?label=%20" alt="Open issues" /></a></td>
+<td align="center"><a href="https://github.com/OHDSI/OhdsiShinyModules/pulls"><img src="https://img.shields.io/github/issues-pr-raw/OHDSI/OhdsiShinyModules?label=%20" alt="Open pull-requests" /></a></td>
+<td align="center"><a href="https://github.com/OHDSI/OhdsiShinyModules/actions?query=workflow%3AR-CMD-check"><img src="https://github.com/OHDSI/OhdsiShinyModules/workflows/R-CMD-check/badge.svg" alt="Build Status" /></a></td>
+<td align="center"><a href="https://codecov.io/github/OHDSI/OhdsiShinyModules?branch=main"><img src="https://codecov.io/github/OHDSI/OhdsiShinyModules/coverage.svg?branch=main" alt="codecov.io" /></a></td>
+</tr>
+<tr class="even">
 <td align="left"><a href="https://github.com/OHDSI/ParallelLogger">ParallelLogger</a></td>
 <td align="center"><a href="https://ohdsi.github.io/ParallelLogger/"><img src="https://img.shields.io/github/r-package/v/ohdsi/ParallelLogger?label=%20" alt="Version" /></a></td>
 <td align="left">Martijn Schuemie</td>
@@ -609,7 +619,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 <td align="center"><a href="https://github.com/OHDSI/ParallelLogger/actions?query=workflow%3AR-CMD-check"><img src="https://github.com/OHDSI/ParallelLogger/workflows/R-CMD-check/badge.svg" alt="Build Status" /></a></td>
 <td align="center"><a href="https://codecov.io/github/OHDSI/ParallelLogger?branch=main"><img src="https://codecov.io/github/OHDSI/ParallelLogger/coverage.svg?branch=main" alt="codecov.io" /></a></td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left"><a href="https://github.com/OHDSI/PatientLevelPrediction">PatientLevelPrediction</a></td>
 <td align="center"><a href="https://ohdsi.github.io/PatientLevelPrediction/"><img src="https://img.shields.io/github/r-package/v/ohdsi/PatientLevelPrediction?label=%20" alt="Version" /></a></td>
 <td align="left">Jenna Reps &amp; Peter Rijnbeek</td>
@@ -619,7 +629,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 <td align="center"><a href="https://github.com/OHDSI/PatientLevelPrediction/actions?query=workflow%3AR-CMD-check"><img src="https://github.com/OHDSI/PatientLevelPrediction/workflows/R-CMD-check/badge.svg" alt="Build Status" /></a></td>
 <td align="center"><a href="https://codecov.io/github/OHDSI/PatientLevelPrediction?branch=main"><img src="https://codecov.io/github/OHDSI/PatientLevelPrediction/coverage.svg?branch=main" alt="codecov.io" /></a></td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left"><a href="https://github.com/OHDSI/PhenotypeLibrary">PhenotypeLibrary</a></td>
 <td align="center"><a href="https://ohdsi.github.io/PhenotypeLibrary/"><img src="https://img.shields.io/github/r-package/v/ohdsi/PhenotypeLibrary?label=%20" alt="Version" /></a></td>
 <td align="left">Gowtham Rao</td>
@@ -629,7 +639,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 <td align="center"><a href="https://github.com/OHDSI/PhenotypeLibrary/actions?query=workflow%3AR-CMD-check"><img src="https://github.com/OHDSI/PhenotypeLibrary/workflows/R-CMD-check/badge.svg" alt="Build Status" /></a></td>
 <td align="center"><a href="https://codecov.io/github/OHDSI/PhenotypeLibrary?branch=main"><img src="https://codecov.io/github/OHDSI/PhenotypeLibrary/coverage.svg?branch=main" alt="codecov.io" /></a></td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left"><a href="https://github.com/OHDSI/PheValuator">PheValuator</a></td>
 <td align="center"><a href="https://ohdsi.github.io/PheValuator/"><img src="https://img.shields.io/github/r-package/v/ohdsi/PheValuator?label=%20" alt="Version" /></a></td>
 <td align="left">Joel Swerdel</td>
@@ -639,7 +649,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 <td align="center"><a href="https://github.com/OHDSI/PheValuator/actions?query=workflow%3AR-CMD-check"><img src="https://github.com/OHDSI/PheValuator/workflows/R-CMD-check/badge.svg" alt="Build Status" /></a></td>
 <td align="center"><a href="https://codecov.io/github/OHDSI/PheValuator?branch=main"><img src="https://codecov.io/github/OHDSI/PheValuator/coverage.svg?branch=main" alt="codecov.io" /></a></td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left"><a href="https://github.com/OHDSI/ROhdsiWebApi">ROhdsiWebApi</a></td>
 <td align="center"><a href="https://ohdsi.github.io/ROhdsiWebApi/"><img src="https://img.shields.io/github/r-package/v/ohdsi/ROhdsiWebApi?label=%20" alt="Version" /></a></td>
 <td align="left">Gowtham Rao</td>
@@ -649,7 +659,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 <td align="center"><a href="https://github.com/OHDSI/ROhdsiWebApi/actions?query=workflow%3AR-CMD-check"><img src="https://github.com/OHDSI/ROhdsiWebApi/workflows/R-CMD-check/badge.svg" alt="Build Status" /></a></td>
 <td align="center"><a href="https://codecov.io/github/OHDSI/ROhdsiWebApi?branch=main"><img src="https://codecov.io/github/OHDSI/ROhdsiWebApi/coverage.svg?branch=main" alt="codecov.io" /></a></td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left"><a href="https://github.com/OHDSI/SelfControlledCaseSeries">SelfControlledCaseSeries</a></td>
 <td align="center"><a href="https://ohdsi.github.io/SelfControlledCaseSeries/"><img src="https://img.shields.io/github/r-package/v/ohdsi/SelfControlledCaseSeries?label=%20" alt="Version" /></a></td>
 <td align="left">Martijn Schuemie</td>
@@ -659,7 +669,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 <td align="center"><a href="https://github.com/OHDSI/SelfControlledCaseSeries/actions?query=workflow%3AR-CMD-check"><img src="https://github.com/OHDSI/SelfControlledCaseSeries/workflows/R-CMD-check/badge.svg" alt="Build Status" /></a></td>
 <td align="center"><a href="https://codecov.io/github/OHDSI/SelfControlledCaseSeries?branch=main"><img src="https://codecov.io/github/OHDSI/SelfControlledCaseSeries/coverage.svg?branch=main" alt="codecov.io" /></a></td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left"><a href="https://github.com/OHDSI/SelfControlledCohort">SelfControlledCohort</a></td>
 <td align="center"><a href="https://ohdsi.github.io/SelfControlledCohort/"><img src="https://img.shields.io/github/r-package/v/ohdsi/SelfControlledCohort?label=%20" alt="Version" /></a></td>
 <td align="left">Jamie Gilbert</td>
@@ -669,7 +679,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 <td align="center"><a href="https://github.com/OHDSI/SelfControlledCohort/actions?query=workflow%3AR-CMD-check"><img src="https://github.com/OHDSI/SelfControlledCohort/workflows/R-CMD-check/badge.svg" alt="Build Status" /></a></td>
 <td align="center"><a href="https://codecov.io/github/OHDSI/SelfControlledCohort?branch=main"><img src="https://codecov.io/github/OHDSI/SelfControlledCohort/coverage.svg?branch=main" alt="codecov.io" /></a></td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left"><a href="https://github.com/OHDSI/SqlRender">SqlRender</a></td>
 <td align="center"><a href="https://ohdsi.github.io/SqlRender/"><img src="https://img.shields.io/github/r-package/v/ohdsi/SqlRender?label=%20" alt="Version" /></a></td>
 <td align="left">Martijn Schuemie</td>

docs/packages.html

@@ -619,6 +619,12 @@ <h4>
 </li>
 <li>
 <h4>
+<i class="fas  fa-cube "></i> <a href="https://ohdsi.github.io/OhdsiShinyModules">OhdsiShinyModules</a>
+</h4>
+Contains shiny modules that can be used within shiny result interfaces</br><a href="https://ohdsi.github.io/OhdsiShinyModules">Learn more…</a>
+</li>
+<li>
+<h4>
 <i class="fas  fa-cube "></i> <a href="https://ohdsi.github.io/ParallelLogger">ParallelLogger</a>
 </h4>
 Support for parallel computation with logging to console, disk, or e-mail.</br><a href="https://ohdsi.github.io/ParallelLogger">Learn more…</a>

docs/support.html

@@ -469,6 +469,7 @@ <h1>Bug reports</h1>
 <li><p><a href="https://github.com/OHDSI/IterativeHardThresholding/issues">IterativeHardThresholding issue tracker</a></p></li>
 <li><p><a href="https://github.com/OHDSI/MethodEvaluation/issues">MethodEvaluation issue tracker</a></p></li>
 <li><p><a href="https://github.com/OHDSI/OhdsiSharing/issues">OhdsiSharing issue tracker</a></p></li>
+<li><p><a href="https://github.com/OHDSI/OhdsiShinyModules/issues">OhdsiShinyModules issue tracker</a></p></li>
 <li><p><a href="https://github.com/OHDSI/ParallelLogger/issues">ParallelLogger issue tracker</a></p></li>
 <li><p><a href="https://github.com/OHDSI/PatientLevelPrediction/issues">PatientLevelPrediction issue tracker</a></p></li>
 <li><p><a href="https://github.com/OHDSI/PhenotypeLibrary/issues">PhenotypeLibrary issue tracker</a></p></li>

extras/packages.csv

@@ -24,6 +24,7 @@ order,name,section,description,inCran,pages,maintainers
 22,Hydra,Supporting packages,Hydrating package skeletons into executable R study packages based on specifications in JSON format.,FALSE,TRUE,Anthony Sena 
 23,IterativeHardThresholding,Supporting packages,Performing L0-based regressions using Cyclops,TRUE,TRUE,Marc Suchard
 24,OhdsiSharing,Supporting packages,Securely sharing (large) files between OHDSI collaborators.,FALSE,TRUE,Lee Evans
+25,OhdsiShinyModules,Supporting packages,Contains shiny modules that can be used within shiny result interfaces,FALSE,TRUE,Jenna Reps
 25,ParallelLogger,Supporting packages,"Support for parallel computation with logging to console, disk, or e-mail.",TRUE,TRUE,Martijn Schuemie 
 26,ROhdsiWebApi,Supporting packages,Interact with OHDSI WebAPI web services.,FALSE,TRUE,Gowtham Rao
 27,SqlRender,Supporting packages,Generate SQL on the fly for the various SQL dialects.,TRUE,TRUE,Martijn Schuemie