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Develop #587

Merged
merged 22 commits into from
Dec 22, 2024
Merged

Develop #587

merged 22 commits into from
Dec 22, 2024

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katy-sadowski
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v 2.6.2 release

Katy Sadowski and others added 22 commits October 24, 2024 09:51
Update the checksToExclude by changing the select() to a pull() to make sure we return the vector only rather than a column. Add explicit namespacing and call the library(dplyr) at the top of the commented code. Update the inspect logs code to correct the file.path() argument to include the cdmSourceName only in the .txt file name.
Fix missing pull() and wrong launchLogViewer() file.path() argument fix #568
Add one new plausibleUnitConceptIds to three ConceptId in version 5.2, 5.3, and 5.4. R script used to add and test included but will not be included with the pull request.

Revert "Update Concept_level.csv to include new plausibleUnitConceptIds"

This reverts commit 3cd5a52.

Update Concept_level.csv to include new plausibleUnitConceptIds

Add one new plausibleUnitConceptIds to three ConceptId in version 5.2, 5.3, and 5.4. R script used to add and test included but will not be included with the pull request.

Revert "Update Concept_level.csv to include new plausibleUnitConceptIds"

This reverts commit 9ab60d1.

to revert

Revert "to revert"

This reverts commit 74453d455b0a88f1b210d7542533181289a29cc3.

to revert

Revert "to revert"

This reverts commit 1ab349678516939e70bce2b2423ca66ac480ee06.

Update Concept_level.csv to include new plausibleUnitConceptIds

Add one new plausibleUnitConceptIds to three ConceptId in version 5.2, 5.3, and 5.4. R script used to add and test included but will not be included with the pull request.
Update Concept_level.csv to include new plausibleUnitConceptIds
added parameter for checkSeverity, updated docs & vignette
Fix bug in threshold for EPISODE_OBJECT_CONCEPT_ID
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codecov bot commented Dec 22, 2024

Codecov Report

Attention: Patch coverage is 75.00000% with 2 lines in your changes missing coverage. Please review.

Project coverage is 84.60%. Comparing base (6ae2569) to head (d575c52).
Report is 80 commits behind head on main.

Files with missing lines Patch % Lines
R/executeDqChecks.R 75.00% 2 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #587      +/-   ##
==========================================
- Coverage   85.05%   84.60%   -0.45%     
==========================================
  Files          16       17       +1     
  Lines         910      942      +32     
==========================================
+ Hits          774      797      +23     
- Misses        136      145       +9     

☔ View full report in Codecov by Sentry.
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@katy-sadowski katy-sadowski merged commit bc21f66 into main Dec 22, 2024
9 of 10 checks passed
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3 participants