Merge pull request #589 from OHDSI/katy-sadowski-patch-2

Update OMOP_CDMv5.4_Field_Level.csv

inst/csv/OMOP_CDMv5.4_Field_Level.csv

@@ -489,10 +489,10 @@ SPECIMEN,cdm,specimen_type_concept_id,Yes,0,,integer,0,,,"Put the source of the
 SPECIMEN,cdm,unit_concept_id,No,,,integer,0,,The unit for the quantity of the specimen.,Map the UNIT_SOURCE_VALUE to a Standard Concept in the Unit domain. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Unit&standardConcept=Standard&page=1&pageSize=15&query=),No,,,Yes,0,,CONCEPT,CONCEPT_ID,,,,,,,Yes,0,,Yes,100,,Yes,5,,No,,,No,,,,,,,,,,,,,,,No,,,,,,,,,,,,,Yes,,,
 SPECIMEN,cdm,unit_source_value,No,,,varchar(50),0,,,"This unit for the quantity of the specimen, as represented in the source.",No,,,No,,,,,,,,,,,No,,,Yes,100,,No,,,No,,,Yes,100,,UNIT_CONCEPT_ID,,,,,,,,,,,,No,,,,,,,,,,,,,Yes,,,
 VISIT_DETAIL,cdm,admitted_from_concept_id,No,,,Integer,0,,"Use this field to determine where the patient was admitted from. This concept is part of the visit domain and can indicate if a patient was admitted to the hospital from a long-term care facility, for example.","If available, map the admitted_from_source_value to a standard concept in the visit domain. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Visit&standardConcept=Standard&page=1&pageSize=15&query=). If the person was admitted from home, set this to 0.",No,,,Yes,0,,CONCEPT,CONCEPT_ID,Visit,0,,,,,Yes,0,,Yes,100,,Yes,5,,No,,,No,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-VISIT_DETAIL,cdm,admitted_from_source_value,No,,,varchar(50),0,,,"This information may be called something different in the source data but the field is meant to contain a value indicating where a person was admitted from. Typically this applies only to visits that have a length of stay, like inpatient visits or long-term care visits.",No,,,No,,,,,,,,,,,No,,,Yes,100,,No,,,No,,,Yes,100,ADMITTED_FROM_CONCEPT_ID,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+VISIT_DETAIL,cdm,admitted_from_source_value,No,,,varchar(50),0,,,"This information may be called something different in the source data but the field is meant to contain a value indicating where a person was admitted from. Typically this applies only to visits that have a length of stay, like inpatient visits or long-term care visits.",No,,,No,,,,,,,,,,,No,,,Yes,100,,No,,,No,,,Yes,100,,ADMITTED_FROM_CONCEPT_ID,,,,,,,,,,,,,,,,,,,,,,,,,,,,
 VISIT_DETAIL,cdm,care_site_id,No,,,integer,0,,This field provides information about the Care Site where the Visit Detail took place.,There should only be one Care Site associated with a Visit Detail.,No,,,Yes,0,,CARE_SITE,CARE_SITE_ID,,,,,,,No,,,Yes,100,,No,,,No,,,No,,,,,,,,,,,,,,,No,,,,,,,,,,,,,Yes,,,
 VISIT_DETAIL,cdm,discharged_to_concept_id,No,,,integer,0,,"Use this field to determine where the patient was discharged to after a visit. This concept is part of the visit domain and can indicate if a patient was transferred to another hospital or sent to a long-term care facility, for example.  It is assumed that a person is discharged to home therefore there is not a standard concept id for ""home"".  Use concept id = 0 when a person is discharged to home.","If available, map the DISCHARGE_TO_SOURCE_VALUE to a Standard Concept in the Visit domain. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Visit&standardConcept=Standard&page=1&pageSize=15&query=).",No,,,Yes,0,,CONCEPT,CONCEPT_ID,Visit,0,,,,,Yes,0,,Yes,100,,Yes,5,,No,,,No,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-VISIT_DETAIL,cdm,discharged_to_source_value,No,,,varchar(50),0,,,"This information may be called something different in the source data but the field is meant to contain a value indicating where a person was discharged to after a visit, as in they went home or were moved to long-term care. Typically this applies only to visits that have a length of stay of a day or more.",No,,,No,,,,,,,,,,,No,,,Yes,100,,No,,,No,,,Yes,100,DISCHARGED_TO_CONCEPT_ID,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+VISIT_DETAIL,cdm,discharged_to_source_value,No,,,varchar(50),0,,,"This information may be called something different in the source data but the field is meant to contain a value indicating where a person was discharged to after a visit, as in they went home or were moved to long-term care. Typically this applies only to visits that have a length of stay of a day or more.",No,,,No,,,,,,,,,,,No,,,Yes,100,,No,,,No,,,Yes,100,,DISCHARGED_TO_CONCEPT_ID,,,,,,,,,,,,,,,,,,,,,,,,,,,,
 VISIT_DETAIL,cdm,parent_visit_detail_id,No,,,integer,0,,Use this field to find the visit detail that subsumes the given visit detail record. This is used in the case that a visit detail record needs to be nested beyond the VISIT_OCCURRENCE/VISIT_DETAIL relationship.,"If there are multiple nested levels to how Visits are represented in the source, the VISIT_DETAIL_PARENT_ID can be used to record this relationship.",No,,,Yes,0,,VISIT_DETAIL,VISIT_DETAIL_ID,,,,,,,No,,,Yes,100,,No,,,No,,,No,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
 VISIT_DETAIL,cdm,person_id,Yes,0,,integer,0,,,,No,,,Yes,0,,PERSON,PERSON_ID,,,,,,,No,,,Yes,0,,No,,,No,,,No,,,,,,,,,,,,,,,No,,,,,,,,,,,,,Yes,,,
 VISIT_DETAIL,cdm,preceding_visit_detail_id,No,,,integer,0,,Use this field to find the visit detail that occurred for the person prior to the given visit detail record. There could be a few days or a few years in between.,"The PRECEDING_VISIT_DETAIL_ID can be used to link a visit immediately preceding the current Visit Detail. Note this is not symmetrical, and there is no such thing as a ""following_visit_id"".",No,,,Yes,0,,VISIT_DETAIL,VISIT_DETAIL_ID,,,,,,,No,,,Yes,100,,No,,,No,,,No,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
@@ -514,10 +514,10 @@ VISIT_DETAIL,cdm,visit_detail_start_datetime,No,,,datetime,0,,,"If no time is gi
 VISIT_DETAIL,cdm,visit_detail_type_concept_id,Yes,0,,integer,0,,"Use this field to understand the provenance of the visit detail record, or where the record comes from.","Populate this field based on the provenance of the visit detail record, as in whether it came from an EHR record or billing claim. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&standardConcept=Standard&page=1&pageSize=15&query=).",No,,,Yes,0,,CONCEPT,CONCEPT_ID,Type Concept,0,,,,,Yes,0,,Yes,0,,Yes,0,,No,,,No,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
 VISIT_DETAIL,cdm,visit_occurrence_id,Yes,0,,integer,0,,Use this field to link the VISIT_DETAIL record to its VISIT_OCCURRENCE.,Put the VISIT_OCCURRENCE_ID that subsumes the VISIT_DETAIL record here.,No,,,Yes,0,,VISIT_OCCURRENCE,VISIT_OCCURRENCE_ID,,,,,,,No,,,Yes,0,,No,,,No,,,No,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
 VISIT_OCCURRENCE,cdm,admitted_from_concept_id,No,,,integer,0,,"Use this field to determine where the patient was admitted from. This concept is part of the visit domain and can indicate if a patient was admitted to the hospital from a long-term care facility, for example.","If available, map the admitted_from_source_value to a standard concept in the visit domain. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Visit&standardConcept=Standard&page=1&pageSize=15&query=). If a person was admitted from home, set this to 0.",No,,,Yes,0,,CONCEPT,CONCEPT_ID,Visit,0,,,,,Yes,0,,Yes,100,,Yes,5,,No,,,No,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-VISIT_OCCURRENCE,cdm,admitted_from_source_value,No,,,varchar(50),0,,,"This information may be called something different in the source data but the field is meant to contain a value indicating where a person was admitted from. Typically this applies only to visits that have a length of stay, like inpatient visits or long-term care visits.",No,,,No,,,,,,,,,,,No,,,Yes,100,,No,,,No,,,Yes,100,ADMITTED_FROM_CONCEPT_ID,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+VISIT_OCCURRENCE,cdm,admitted_from_source_value,No,,,varchar(50),0,,,"This information may be called something different in the source data but the field is meant to contain a value indicating where a person was admitted from. Typically this applies only to visits that have a length of stay, like inpatient visits or long-term care visits.",No,,,No,,,,,,,,,,,No,,,Yes,100,,No,,,No,,,Yes,100,,ADMITTED_FROM_CONCEPT_ID,,,,,,,,,,,,,,,,,,,,,,,,,,,,
 VISIT_OCCURRENCE,cdm,care_site_id,No,,,integer,0,,This field provides information about the Care Site where the Visit took place.,There should only be one Care Site associated with a Visit.,No,,,Yes,0,,CARE_SITE,CARE_SITE_ID,,,,,,,No,,,Yes,100,,No,,,No,,,No,,,,,,,,,,,,,,,No,,,,,,,,,,,,,Yes,,,
 VISIT_OCCURRENCE,cdm,discharged_to_concept_id,No,,,integer,0,,"Use this field to determine where the patient was discharged to after a visit. This concept is part of the visit domain and can indicate if a patient was transferred to another hospital or sent to a long-term care facility, for example.  It is assumed that a person is discharged to home therefore there is not a standard concept id for ""home"".  Use concept id = 0 when a person is discharged to home.","If available, map the discharged_to_source_value to a standard concept in the visit domain. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Visit&standardConcept=Standard&page=1&pageSize=15&query=).",No,,,Yes,0,,CONCEPT,CONCEPT_ID,Visit,0,,,,,Yes,0,,Yes,100,,Yes,5,,No,,,No,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-VISIT_OCCURRENCE,cdm,discharged_to_source_value,No,,,varchar(50),0,,,"This information may be called something different in the source data but the field is meant to contain a value indicating where a person was discharged to after a visit, as in they went home or were moved to long-term care. Typically this applies only to visits that have a length of stay of a day or more.",No,,,No,,,,,,,,,,,No,,,Yes,100,,No,,,No,,,Yes,100,DISCHARGED_TO_CONCEPT_ID,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+VISIT_OCCURRENCE,cdm,discharged_to_source_value,No,,,varchar(50),0,,,"This information may be called something different in the source data but the field is meant to contain a value indicating where a person was discharged to after a visit, as in they went home or were moved to long-term care. Typically this applies only to visits that have a length of stay of a day or more.",No,,,No,,,,,,,,,,,No,,,Yes,100,,No,,,No,,,Yes,100,,DISCHARGED_TO_CONCEPT_ID,,,,,,,,,,,,,,,,,,,,,,,,,,,,
 VISIT_OCCURRENCE,cdm,person_id,Yes,0,,integer,0,,,,No,,,Yes,0,,PERSON,PERSON_ID,,,,,,,No,,,Yes,0,,No,,,No,,,No,,,,,,,,,,,,,,,No,,,,,,,,,,,,,Yes,,,
 VISIT_OCCURRENCE,cdm,preceding_visit_occurrence_id,No,,,integer,0,,Use this field to find the visit that occurred for the person prior to the given visit. There could be a few days or a few years in between.,"This field can be used to link a visit immediately preceding the current visit. Note this is not symmetrical, and there is no such thing as a ""following_visit_id"".",No,,,Yes,0,,VISIT_OCCURRENCE,VISIT_OCCURRENCE_ID,,,,,,,No,,,Yes,100,,No,,,No,,,No,,,,,,,,,,,,,,,No,,,,,,,,,,,,,Yes,,,
 VISIT_OCCURRENCE,cdm,provider_id,No,,,integer,0,,"There will only be one provider per visit record and the ETL document should clearly state how they were chosen (attending, admitting, etc.). If there are multiple providers associated with a visit in the source, this can be reflected in the event tables (CONDITION_OCCURRENCE, PROCEDURE_OCCURRENCE, etc.) or in the VISIT_DETAIL table.","If there are multiple providers associated with a visit, you will need to choose which one to put here. The additional providers can be stored in the [VISIT_DETAIL](https://ohdsi.github.io/CommonDataModel/cdm531.html#visit_detail) table.",No,,,Yes,0,,PROVIDER,PROVIDER_ID,,,,,,,No,,,Yes,100,,No,,,No,,,No,,,,,,,,,,,,,,,No,,,,,,,,,,,,,Yes,,,
@@ -547,4 +547,4 @@ VOCABULARY,vocab,vocabulary_reference,No,,,varchar(255),0,,"External reference t
 available download of the about the
 vocabulary.",,No,,,No,,,,,,,,,,,No,,,No,100,,No,,,No,,,No,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
 VOCABULARY,vocab,vocabulary_version,No,,,varchar(255),0,,"Version of the Vocabulary as indicated in
-the source.",,No,,,No,,,,,,,,,,,No,,,No,100,,No,,,No,,,No,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+the source.",,No,,,No,,,,,,,,,,,No,,,No,100,,No,,,No,,,No,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,