Fix error when calling groupApply() with dbplyr >= 2.5.0. Increas…

…ing version number. Regenerating documentation.
OHDSI · Mar 21, 2024 · c3fde90 · c3fde90
1 parent ecec5ab
commit c3fde90
Show file tree

Hide file tree

Showing 38 changed files with 84 additions and 56 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: Andromeda
 Type: Package
 Title: Asynchronous Disk-Based Representation of Massive Data
-Version: 0.6.5
-Date: 2024-01-19
+Version: 0.6.6
+Date: 2024-03-21
 Authors@R: c(
   person("Adam", "Black", , "[email protected]", role = c("aut")),
   person("Egill", "Fridgeirsson", , "[email protected]", role = c("aut")),

diff --git a/NEWS.md b/NEWS.md
@@ -1,25 +1,43 @@
+Andromeda 0.6.6
+===============
+
+Bugfixes
+
+- Fix error when calling `groupApply()` with `dbplyr` >= 2.5.0.
+
 Andromeda 0.6.5
 ===============
 
+Bugfixes
+
 - Ensuring package passes R check even when `arrow` is not installed. Required to stay in CRAN.
 
 Andromeda 0.6.4
 ===============
+
+Bugfixes
+
 - Fix a bug causing Andromeda saving not to respect andromeda temp folder
 
 Andromeda 0.6.3
 ===============
+
+Bugfixes
+
 - Fix workflow
 
 Andromeda 0.6.2
 ===============
-- add isAndromedaTable
-- update docs
-- add weekly r check yaml
+
+Changes
+
+- Added  `isAndromedaTable()` function.
 
 Andromeda 0.6.1
 ===============
 
+Bugfixes
+
 - Fix compatibility with dbplyr.
 
 

diff --git a/R/Operations.R b/R/Operations.R
@@ -161,7 +161,7 @@ groupApply <- function(tbl, groupVariable, fun, ..., batchSize = 100000, progres
     env$groupData <- groups[[length(groups)]]
     env$groupValue <- groups[[length(groups)]][1, groupVariable]
   }
-  batchApply(tbl = tbl %>% arrange(rlang::sym(groupVariable)),
+  batchApply(tbl = tbl %>% arrange(groupVariable),
              fun = wrapper,
              userFun = fun,
              env = env,

diff --git a/cran-comments.md b/cran-comments.md
@@ -1,7 +1,7 @@
-Andromeda v0.6.5
+Andromeda v0.6.6
 ---
 
-This is a patch release that fixes the error observed on r-devel-linux-x86_64-fedora-clang.
+This is a patch release that fixes the error observed on various CRAN testing instances following the release of dbplyr 2.5.0.
 
 ## Test environments
 * Windows-latest, R-release (Github Actions)
@@ -15,4 +15,6 @@ This is a patch release that fixes the error observed on r-devel-linux-x86_64-fe
 
 There were no ERRORs or WARNINGs on any platform.
 
+## Downstream dependencies
 
+DatabaseConnector is used by Cyclops, TreatmentPatterns, CohortAlgebra, DatabaseConnector, which were tested with this new version. No issues were found.
diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/UsingAndromeda.html b/docs/articles/UsingAndromeda.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -3,5 +3,5 @@ pkgdown: 2.0.7
 pkgdown_sha: ~
 articles:
   UsingAndromeda: UsingAndromeda.html
-last_built: 2024-01-19T11:00Z
+last_built: 2024-03-21T09:19Z
 
diff --git a/docs/reference/Andromeda-class.html b/docs/reference/Andromeda-class.html
diff --git a/docs/reference/Andromeda-package.html b/docs/reference/Andromeda-package.html
diff --git a/docs/reference/andromeda_constructor.html b/docs/reference/andromeda_constructor.html
diff --git a/docs/reference/appendToTable.html b/docs/reference/appendToTable.html
diff --git a/docs/reference/batchApply.html b/docs/reference/batchApply.html
diff --git a/docs/reference/batchTest.html b/docs/reference/batchTest.html
diff --git a/docs/reference/copyAndromeda.html b/docs/reference/copyAndromeda.html
diff --git a/docs/reference/createIndex.html b/docs/reference/createIndex.html
diff --git a/docs/reference/getAndromedaTempDiskSpace.html b/docs/reference/getAndromedaTempDiskSpace.html
diff --git a/docs/reference/groupApply.html b/docs/reference/groupApply.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/isAndromeda.html b/docs/reference/isAndromeda.html
diff --git a/docs/reference/isAndromedaTable.html b/docs/reference/isAndromedaTable.html
diff --git a/docs/reference/isValidAndromeda.html b/docs/reference/isValidAndromeda.html