Collection of bioinformatics resources
R for Large Data & Bioinformatics
- R Basics Manual
- BioConductor Manual
- NGS Analysis with R/Bioconductor
- NGS Analysis with Galaxy and IGV
- Programming in R
- Vim-R-Tmux: Command-Line IDE for R
- ChemmineR
- EMBOSS
- Linux Essentials
- IIGB's Linux Cluster Manual
WebMeV (Multiple Experiment Viewer) is a cloud-based application supporting analysis, visualization, and stratification of large genomic data, particularly for RNASeq and microarray data.
RNA-Seq for the Next Generation
A new algorithmic tool for detecting known viruses and their integration sites using next-generation sequencing of human cancer tissue.
Degust is for RNA-seq exploration, analysis and visualisation
Melbourne Bioinformatics RNA-Seq - Differential Gene Expression
DIY.transcriptomics A collection of local (UPenn), regional (Philly), and online places where you can go to learn more about using R/bioconductor.
biological DataBase network is an application integrating a vast number of biological databases including Gene, UniProt, Ensembl, GO, Affy, RefSeq etc. The databases are created by downloading data from various public resources. They are formatted and maintained in a relational structure at the Advanced Biomedical Computing Center (ABCC).
Data Analysis in Genome Biology
GEN242 is a graduate class taught at the University of California, Riverside
RNA-seq workflow: gene-level exploratory analysis and differential expression
Teaching Materials
UC Business Analytics R Programming Guide
List of RNA-Seq bioinformatics tools
Introduction to Bioinformatics course (IBT)
Reference-based RNA-Seq data analysis
Northwest Association for Biomedical Research
ISCB High School Teachers Workshop
Gene Expression Profiling Interactive Analysis
Lists of Genomics Software/Service Providers
viral-ngs: genomic analysis pipelines for viral sequencing
A Primer for Computational Biology
The Biologist’s Guide to Computing
Learn about Bioinformatics and Computational Tools for Biology
R Markdown: The Definitive Guide
ShinyGO v0.61: Gene Ontology Enrichment Analysis