{2023.06}[foss/2022a] add bio packages - set 2 #183

trz42 · 2023-10-06T19:28:14Z

Will install the following packages (including dependencies):

AdapterRemoval/2.3.3-GCC-11.3.0 (AdapterRemoval-2.3.3-GCC-11.3.0.eb)
BEDTools/2.30.0-GCC-11.3.0 (BEDTools-2.30.0-GCC-11.3.0.eb)
~~BWA/0.7.17-GCCcore-11.3.0 (BWA-0.7.17-GCCcore-11.3.0.eb)~~ removed because it failed to build for aarch64/generic $\longrightarrow$ open a separate PR for it
~~BBMap/39.01-GCC-11.3.0 (BBMap-39.01-GCC-11.3.0.eb)~~ removed because it failed repeatedly for aarch64/generic $\longrightarrow$ open a separate PR for it
~~Beast/2.7.3-GCC-11.3.0 (Beast-2.7.3-GCC-11.3.0.eb)~~ removed because dependency Clang failed to build for aarch64/generic $\longrightarrow$ open a separate PR for it
~~Bio-DB-HTS/3.01-GCC-11.3.0 (Bio-DB-HTS-3.01-GCC-11.3.0.eb)~~ removed because dependency DB_File failed to build for aarch64/generic $\longrightarrow$ open a separate PR for it
~~Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0 (Bio-SearchIO-hmmer-1.7.3-GCC-11.3.0.eb)~~ removed because dependency DB_File failed to build for aarch64/generic $\longrightarrow$ open a separate PR for it

nessi-bot · 2023-10-06T19:28:18Z

Instance eX3-NESSI is configured to build:

arch x86_64/amd/zen2 for repo nessi-2022.11-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2022.11-swl-deb10
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-06T19:28:18Z

Instance AWS-NESSI is configured to build:

arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2022.11-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/intel/cascadelake for repo nessi-2022.11-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-cl
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb11
arch x86_64/amd/zen2 for repo nessi-2022.11-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2022.11-swl-deb10
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-06T19:28:19Z

Instance Saga-NESSI is configured to build:

arch x86_64/intel/cascadelake for repo nessi-2022.11-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-cl
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb10
arch x86_64/intel/cascadelake for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2022.11-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2023-10-06T19:28:19Z

Instance Fram-NESSI is configured to build:

arch x86_64/generic for repo nessi-2022.11-swl-deb10
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/broadwell for repo nessi-2022.11-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-cl
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb11

trz42 · 2023-10-06T19:29:22Z

bot: build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11
bot: build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11
bot: build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11
bot: build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10
bot: build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11
bot: build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11

nessi-bot · 2023-10-06T19:29:25Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 14006, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 14007, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-06T19:29:25Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7754, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7755, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7756, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)

nessi-bot · 2023-10-06T19:29:25Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- submitted job 5424081, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-06T19:29:25Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-06T19:29:30Z

New job on instance eX3-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_183/14006

date	job status	comment
Oct 06 07:29:05 PM UTC 2023	submitted	job id `14006` awaits release by job manager
Oct 06 07:30:26 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 06 07:35:37 PM UTC 2023	running	job `14006` is running
Oct 06 08:41:39 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-14006.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1696624399.tar.gz` size: 1042 MiB (1092898127 bytes) entries: 11826 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BBMap/39.01-GCC-11.3.0.lua` `beagle-lib/4.0.0-GCC-11.3.0.lua` `Beast/2.7.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` `Bio-DB-HTS/3.01-GCC-11.3.0.lua` `BioPerl/1.7.8-GCCcore-11.3.0.lua` `Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0.lua` `BWA/0.7.17-GCCcore-11.3.0.lua` `Clang/13.0.1-GCCcore-11.3.0.lua` `CMake/3.24.3-GCCcore-11.3.0.lua` `DB_File/1.858-GCCcore-11.3.0.lua` `elfutils/0.187-GCCcore-11.3.0.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `pocl/1.8-GCC-11.3.0.lua` `XML-LibXML/2.0207-GCCcore-11.3.0.lua` `Z3/4.10.2-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BBMap/39.01-GCC-11.3.0` `beagle-lib/4.0.0-GCC-11.3.0` `Beast/2.7.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` `Bio-DB-HTS/3.01-GCC-11.3.0` `BioPerl/1.7.8-GCCcore-11.3.0` `Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0` `BWA/0.7.17-GCCcore-11.3.0` `Clang/13.0.1-GCCcore-11.3.0` `CMake/3.24.3-GCCcore-11.3.0` `DB_File/1.858-GCCcore-11.3.0` `elfutils/0.187-GCCcore-11.3.0` `Ninja/1.10.2-GCCcore-11.3.0` `pocl/1.8-GCC-11.3.0` `XML-LibXML/2.0207-GCCcore-11.3.0` `Z3/4.10.2-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-06T19:29:31Z

New job on instance AWS-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_183/7754

date	job status	comment
Oct 06 07:29:30 PM UTC 2023	submitted	job id `7754` awaits release by job manager
Oct 06 07:30:48 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 06 07:35:01 PM UTC 2023	running	job `7754` is running
Oct 06 09:51:47 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7754.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1696628815.tar.gz` size: 1034 MiB (1085083001 bytes) entries: 11826 modules under 2023.06/software/linux/x86_64/generic/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BBMap/39.01-GCC-11.3.0.lua` `beagle-lib/4.0.0-GCC-11.3.0.lua` `Beast/2.7.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` `Bio-DB-HTS/3.01-GCC-11.3.0.lua` `BioPerl/1.7.8-GCCcore-11.3.0.lua` `Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0.lua` `BWA/0.7.17-GCCcore-11.3.0.lua` `Clang/13.0.1-GCCcore-11.3.0.lua` `CMake/3.24.3-GCCcore-11.3.0.lua` `DB_File/1.858-GCCcore-11.3.0.lua` `elfutils/0.187-GCCcore-11.3.0.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `pocl/1.8-GCC-11.3.0.lua` `XML-LibXML/2.0207-GCCcore-11.3.0.lua` `Z3/4.10.2-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BBMap/39.01-GCC-11.3.0` `beagle-lib/4.0.0-GCC-11.3.0` `Beast/2.7.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` `Bio-DB-HTS/3.01-GCC-11.3.0` `BioPerl/1.7.8-GCCcore-11.3.0` `Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0` `BWA/0.7.17-GCCcore-11.3.0` `Clang/13.0.1-GCCcore-11.3.0` `CMake/3.24.3-GCCcore-11.3.0` `DB_File/1.858-GCCcore-11.3.0` `elfutils/0.187-GCCcore-11.3.0` `Ninja/1.10.2-GCCcore-11.3.0` `pocl/1.8-GCC-11.3.0` `XML-LibXML/2.0207-GCCcore-11.3.0` `Z3/4.10.2-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-06T19:29:33Z

New job on instance Fram-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb10 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_183/5424081

date	job status	comment
Oct 06 19:29:32 UTC 2023	submitted	job id `5424081` awaits release by job manager
Oct 06 19:29:54 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 06 19:34:58 UTC 2023	running	job `5424081` is running
Oct 06 22:16:51 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5424081.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696630280.tar.gz` size: 1042 MiB (1093638242 bytes) entries: 11826 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BBMap/39.01-GCC-11.3.0.lua` `beagle-lib/4.0.0-GCC-11.3.0.lua` `Beast/2.7.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` `Bio-DB-HTS/3.01-GCC-11.3.0.lua` `BioPerl/1.7.8-GCCcore-11.3.0.lua` `Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0.lua` `BWA/0.7.17-GCCcore-11.3.0.lua` `Clang/13.0.1-GCCcore-11.3.0.lua` `CMake/3.24.3-GCCcore-11.3.0.lua` `DB_File/1.858-GCCcore-11.3.0.lua` `elfutils/0.187-GCCcore-11.3.0.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `pocl/1.8-GCC-11.3.0.lua` `XML-LibXML/2.0207-GCCcore-11.3.0.lua` `Z3/4.10.2-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BBMap/39.01-GCC-11.3.0` `beagle-lib/4.0.0-GCC-11.3.0` `Beast/2.7.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` `Bio-DB-HTS/3.01-GCC-11.3.0` `BioPerl/1.7.8-GCCcore-11.3.0` `Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0` `BWA/0.7.17-GCCcore-11.3.0` `Clang/13.0.1-GCCcore-11.3.0` `CMake/3.24.3-GCCcore-11.3.0` `DB_File/1.858-GCCcore-11.3.0` `elfutils/0.187-GCCcore-11.3.0` `Ninja/1.10.2-GCCcore-11.3.0` `pocl/1.8-GCC-11.3.0` `XML-LibXML/2.0207-GCCcore-11.3.0` `Z3/4.10.2-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/intel/broadwell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-06T19:29:34Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_183/14007

date	job status	comment
Oct 06 07:29:09 PM UTC 2023	submitted	job id `14007` awaits release by job manager
Oct 06 07:30:23 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 06 07:35:35 PM UTC 2023	running	job `14007` is running
Oct 06 07:40:44 PM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-14007.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1696620929.tar.gz` size: 0 MiB (735328 bytes) entries: 37 modules under 2023.06/software/linux/aarch64/generic/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` software under 2023.06/software/linux/aarch64/generic/software `AdapterRemoval/2.3.3-GCC-11.3.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-06T19:29:42Z

New job on instance AWS-NESSI for architecture x86_64-intel-cascadelake for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_183/7755

date	job status	comment
Oct 06 07:29:40 PM UTC 2023	submitted	job id `7755` awaits release by job manager
Oct 06 07:30:45 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 06 07:43:24 PM UTC 2023	running	job `7755` is running
Oct 06 10:12:53 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7755.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696630126.tar.gz` size: 1040 MiB (1090527006 bytes) entries: 11826 modules under 2023.06/software/linux/x86_64/intel/cascadelake/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BBMap/39.01-GCC-11.3.0.lua` `beagle-lib/4.0.0-GCC-11.3.0.lua` `Beast/2.7.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` `Bio-DB-HTS/3.01-GCC-11.3.0.lua` `BioPerl/1.7.8-GCCcore-11.3.0.lua` `Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0.lua` `BWA/0.7.17-GCCcore-11.3.0.lua` `Clang/13.0.1-GCCcore-11.3.0.lua` `CMake/3.24.3-GCCcore-11.3.0.lua` `DB_File/1.858-GCCcore-11.3.0.lua` `elfutils/0.187-GCCcore-11.3.0.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `pocl/1.8-GCC-11.3.0.lua` `XML-LibXML/2.0207-GCCcore-11.3.0.lua` `Z3/4.10.2-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/cascadelake/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BBMap/39.01-GCC-11.3.0` `beagle-lib/4.0.0-GCC-11.3.0` `Beast/2.7.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` `Bio-DB-HTS/3.01-GCC-11.3.0` `BioPerl/1.7.8-GCCcore-11.3.0` `Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0` `BWA/0.7.17-GCCcore-11.3.0` `Clang/13.0.1-GCCcore-11.3.0` `CMake/3.24.3-GCCcore-11.3.0` `DB_File/1.858-GCCcore-11.3.0` `elfutils/0.187-GCCcore-11.3.0` `Ninja/1.10.2-GCCcore-11.3.0` `pocl/1.8-GCC-11.3.0` `XML-LibXML/2.0207-GCCcore-11.3.0` `Z3/4.10.2-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/intel/cascadelake `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-06T19:29:48Z

New job on instance AWS-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_183/7756

date	job status	comment
Oct 06 07:29:47 PM UTC 2023	submitted	job id `7756` awaits release by job manager
Oct 06 07:30:43 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 06 07:34:59 PM UTC 2023	running	job `7756` is running
Oct 06 09:22:12 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7756.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696626997.tar.gz` size: 1039 MiB (1090427846 bytes) entries: 11826 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BBMap/39.01-GCC-11.3.0.lua` `beagle-lib/4.0.0-GCC-11.3.0.lua` `Beast/2.7.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` `Bio-DB-HTS/3.01-GCC-11.3.0.lua` `BioPerl/1.7.8-GCCcore-11.3.0.lua` `Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0.lua` `BWA/0.7.17-GCCcore-11.3.0.lua` `Clang/13.0.1-GCCcore-11.3.0.lua` `CMake/3.24.3-GCCcore-11.3.0.lua` `DB_File/1.858-GCCcore-11.3.0.lua` `elfutils/0.187-GCCcore-11.3.0.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `pocl/1.8-GCC-11.3.0.lua` `XML-LibXML/2.0207-GCCcore-11.3.0.lua` `Z3/4.10.2-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BBMap/39.01-GCC-11.3.0` `beagle-lib/4.0.0-GCC-11.3.0` `Beast/2.7.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` `Bio-DB-HTS/3.01-GCC-11.3.0` `BioPerl/1.7.8-GCCcore-11.3.0` `Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0` `BWA/0.7.17-GCCcore-11.3.0` `Clang/13.0.1-GCCcore-11.3.0` `CMake/3.24.3-GCCcore-11.3.0` `DB_File/1.858-GCCcore-11.3.0` `elfutils/0.187-GCCcore-11.3.0` `Ninja/1.10.2-GCCcore-11.3.0` `pocl/1.8-GCC-11.3.0` `XML-LibXML/2.0207-GCCcore-11.3.0` `Z3/4.10.2-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

trz42 · 2023-10-06T20:26:50Z

Build on eX3 for aarch64/generic with deb11 container failed. Retry with deb10 container.

bot: build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb10

nessi-bot · 2023-10-06T20:26:52Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb10
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-06T20:26:52Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb10
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-06T20:26:52Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb10
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb10 resulted in:
- submitted job 14011, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)

nessi-bot · 2023-10-06T20:26:52Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb10
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-06T20:26:57Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb10 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_183/14011

date	job status	comment
Oct 06 08:26:32 PM UTC 2023	submitted	job id `14011` awaits release by job manager
Oct 06 08:31:20 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 06 08:36:33 PM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-14011.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1696624498.tar.gz` size: 0 MiB (736395 bytes) entries: 37 modules under 2023.06/software/linux/aarch64/generic/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` software under 2023.06/software/linux/aarch64/generic/software `AdapterRemoval/2.3.3-GCC-11.3.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

trz42 · 2023-10-06T20:48:36Z

Rebuild after removing BBMap from list of easyconfigs to be built.

bot: build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11
bot: build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11
bot: build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11
bot: build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10
bot: build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11
bot: build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11

nessi-bot · 2023-10-06T20:48:38Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 14012, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 14013, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-06T20:48:38Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- submitted job 5424097, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-06T20:48:39Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-06T20:48:39Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7761, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7762, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7763, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)

nessi-bot · 2023-10-06T20:48:44Z

New job on instance eX3-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_183/14012

date	job status	comment
Oct 06 08:48:19 PM UTC 2023	submitted	job id `14012` awaits release by job manager
Oct 06 08:51:54 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 06 08:57:05 PM UTC 2023	running	job `14012` is running
Oct 06 10:03:21 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-14012.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1696629481.tar.gz` size: 1031 MiB (1081318792 bytes) entries: 9526 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `beagle-lib/4.0.0-GCC-11.3.0.lua` `Beast/2.7.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` `Bio-DB-HTS/3.01-GCC-11.3.0.lua` `BioPerl/1.7.8-GCCcore-11.3.0.lua` `Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0.lua` `BWA/0.7.17-GCCcore-11.3.0.lua` `Clang/13.0.1-GCCcore-11.3.0.lua` `CMake/3.24.3-GCCcore-11.3.0.lua` `DB_File/1.858-GCCcore-11.3.0.lua` `elfutils/0.187-GCCcore-11.3.0.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `pocl/1.8-GCC-11.3.0.lua` `XML-LibXML/2.0207-GCCcore-11.3.0.lua` `Z3/4.10.2-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `AdapterRemoval/2.3.3-GCC-11.3.0` `beagle-lib/4.0.0-GCC-11.3.0` `Beast/2.7.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` `Bio-DB-HTS/3.01-GCC-11.3.0` `BioPerl/1.7.8-GCCcore-11.3.0` `Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0` `BWA/0.7.17-GCCcore-11.3.0` `Clang/13.0.1-GCCcore-11.3.0` `CMake/3.24.3-GCCcore-11.3.0` `DB_File/1.858-GCCcore-11.3.0` `elfutils/0.187-GCCcore-11.3.0` `Ninja/1.10.2-GCCcore-11.3.0` `pocl/1.8-GCC-11.3.0` `XML-LibXML/2.0207-GCCcore-11.3.0` `Z3/4.10.2-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-07T18:26:40Z

New job on instance AWS-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_183/7774

date	job status	comment
Oct 07 06:26:39 PM UTC 2023	submitted	job id `7774` awaits release by job manager
Oct 07 06:28:09 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 06:32:18 PM UTC 2023	running	job `7774` is running
Oct 07 06:44:48 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7774.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1696704147.tar.gz` size: 35 MiB (37226085 bytes) entries: 746 modules under 2023.06/software/linux/x86_64/generic/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` `BWA/0.7.17-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` `BWA/0.7.17-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-07T18:26:41Z

New job on instance Fram-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb10 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_183/5424637

date	job status	comment
Oct 07 18:26:40 UTC 2023	submitted	job id `5424637` awaits release by job manager
Oct 07 18:28:36 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 18:33:37 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5424637.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696703563.tar.gz` size: 35 MiB (37295642 bytes) entries: 746 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` `BWA/0.7.17-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` `BWA/0.7.17-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/intel/broadwell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-07T18:26:43Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_183/14070

date	job status	comment
Oct 07 06:26:18 PM UTC 2023	submitted	job id `14070` awaits release by job manager
Oct 07 06:30:19 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 06:35:25 PM UTC 2023	running	job `14070` is running
Oct 07 06:40:26 PM UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-14070.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1696703756.tar.gz` size: 34 MiB (36481267 bytes) entries: 696 modules under 2023.06/software/linux/aarch64/generic/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` software under 2023.06/software/linux/aarch64/generic/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-07T18:26:51Z

New job on instance AWS-NESSI for architecture x86_64-intel-cascadelake for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_183/7775

date	job status	comment
Oct 07 06:26:50 PM UTC 2023	submitted	job id `7775` awaits release by job manager
Oct 07 06:28:06 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 06:32:15 PM UTC 2023	running	job `7775` is running
Oct 07 06:42:46 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7775.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696704116.tar.gz` size: 35 MiB (37247468 bytes) entries: 746 modules under 2023.06/software/linux/x86_64/intel/cascadelake/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` `BWA/0.7.17-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/cascadelake/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` `BWA/0.7.17-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/intel/cascadelake `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

nessi-bot · 2023-10-07T18:26:58Z

New job on instance AWS-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_183/7776

date	job status	comment
Oct 07 06:26:57 PM UTC 2023	submitted	job id `7776` awaits release by job manager
Oct 07 06:28:03 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 06:32:12 PM UTC 2023	running	job `7776` is running
Oct 07 06:42:44 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7776.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696704119.tar.gz` size: 35 MiB (37251889 bytes) entries: 746 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` `BWA/0.7.17-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` `BWA/0.7.17-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

trz42 · 2023-10-07T18:50:41Z

bot: build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11
bot: build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11
bot: build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11
bot: build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10
bot: build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11
bot: build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11

nessi-bot · 2023-10-07T18:50:43Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- submitted job 5424642, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T18:50:43Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 14071, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 14072, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T18:50:43Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T18:50:43Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
received bot command build inst:eX3 arch:aarch64/generic repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11
received bot command build inst:Fram arch:x86_64/intel/broadwell repo:nessi-2023.06-swl-deb10 from trz42
- expanded format: build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10
received bot command build inst:AWS arch:x86_64/intel/cascadelake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11
received bot command build inst:AWS arch:x86_64/intel/skylake repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7777, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:eX3 architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:eX3 architecture:aarch64/generic repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted
handling command build instance:Fram architecture:x86_64/intel/broadwell repository:nessi-2023.06-swl-deb10 resulted in:
- no jobs were submitted
handling command build instance:AWS architecture:x86_64/intel/cascadelake repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7778, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
handling command build instance:AWS architecture:x86_64/intel/skylake repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7779, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)

nessi-bot · 2023-10-07T18:50:47Z

New job on instance eX3-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_183/14071

date	job status	comment
Oct 07 06:50:23 PM UTC 2023	submitted	job id `14071` awaits release by job manager
Oct 07 06:50:34 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 07:15:48 PM UTC 2023	finished	🤷 UNKNOWN (click triangle for details) Job results file `_bot_job14071.result` does not exist in job directory or reading it failed. No artefacts were found/reported.

nessi-bot · 2023-10-07T18:50:50Z

New job on instance Fram-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb10 in job dir /cluster/projects/nn9992k/pilot.nessi.no/PR155/jobs/2023.10/pr_183/5424642

date	job status	comment
Oct 07 18:50:49 UTC 2023	submitted	job id `5424642` awaits release by job manager
Oct 07 18:53:42 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 18:58:43 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5424642.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696705049.tar.gz` size: 35 MiB (36863370 bytes) entries: 696 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` other under 2023.06/software/linux/x86_64/intel/broadwell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 07 19:35:55 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696705049.tar.gz` to S3 bucket succeeded
Oct 07 07:50:38 PM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696705049.tar.gz` downloaded to Stratum-0
Oct 07 08:00:42 PM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/584 to approve ingest
Oct 07 08:04:54 PM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696705049.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/584
Oct 07 08:06:47 PM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1696705049.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/broadwell/`

nessi-bot · 2023-10-07T18:50:50Z

New job on instance AWS-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_183/7777

date	job status	comment
Oct 07 06:50:49 PM UTC 2023	submitted	job id `7777` awaits release by job manager
Oct 07 06:52:59 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 06:57:08 PM UTC 2023	running	job `7777` is running
Oct 07 07:09:41 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7777.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1696705648.tar.gz` size: 35 MiB (36814841 bytes) entries: 696 modules under 2023.06/software/linux/x86_64/generic/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 07 07:36:04 PM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1696705648.tar.gz` to S3 bucket succeeded
Oct 07 07:51:34 PM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-generic-1696705648.tar.gz` downloaded to Stratum-0
Oct 07 08:00:38 PM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/583 to approve ingest
Oct 07 08:04:50 PM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-generic-1696705648.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/583
Oct 07 08:06:19 PM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-generic-1696705648.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/generic/`

nessi-bot · 2023-10-07T18:50:51Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/PR155/jobs/2023.10/pr_183/14072

date	job status	comment
Oct 07 06:50:26 PM UTC 2023	submitted	job id `14072` awaits release by job manager
Oct 07 06:50:31 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 06:55:37 PM UTC 2023	running	job `14072` is running
Oct 07 07:00:38 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-14072.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1696704901.tar.gz` size: 34 MiB (36475228 bytes) entries: 696 modules under 2023.06/software/linux/aarch64/generic/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` software under 2023.06/software/linux/aarch64/generic/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 07 07:40:50 PM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1696704901.tar.gz` to S3 bucket succeeded
Oct 07 07:46:44 PM UTC 2023	staged	tarball `eessi-2023.06-software-linux-aarch64-generic-1696704901.tar.gz` downloaded to Stratum-0
Oct 07 08:00:29 PM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/581 to approve ingest
Oct 07 08:04:44 PM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-aarch64-generic-1696704901.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/581
Oct 07 08:05:28 PM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-aarch64-generic-1696704901.tar.gz` successfully ingested at `2023.06/software/linux/aarch64/generic/`

nessi-bot · 2023-10-07T18:51:01Z

New job on instance AWS-NESSI for architecture x86_64-intel-cascadelake for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_183/7778

date	job status	comment
Oct 07 06:51:00 PM UTC 2023	submitted	job id `7778` awaits release by job manager
Oct 07 06:52:56 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 06:57:05 PM UTC 2023	running	job `7778` is running
Oct 07 07:07:38 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7778.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696705592.tar.gz` size: 35 MiB (36819245 bytes) entries: 696 modules under 2023.06/software/linux/x86_64/intel/cascadelake/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/cascadelake/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` other under 2023.06/software/linux/x86_64/intel/cascadelake `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 07 07:35:51 PM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696705592.tar.gz` to S3 bucket succeeded
Oct 07 07:50:41 PM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696705592.tar.gz` downloaded to Stratum-0
Oct 07 08:00:46 PM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/585 to approve ingest
Oct 07 08:04:57 PM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696705592.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/585
Oct 07 08:07:13 PM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-cascadelake-1696705592.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/cascadelake/`

nessi-bot · 2023-10-07T18:51:08Z

New job on instance AWS-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_183/7779

date	job status	comment
Oct 07 06:51:07 PM UTC 2023	submitted	job id `7779` awaits release by job manager
Oct 07 06:52:53 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 06:57:02 PM UTC 2023	running	job `7779` is running
Oct 07 07:07:37 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7779.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696705597.tar.gz` size: 35 MiB (36821595 bytes) entries: 696 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 07 07:36:16 PM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696705597.tar.gz` to S3 bucket succeeded
Oct 07 07:50:44 PM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696705597.tar.gz` downloaded to Stratum-0
Oct 07 08:00:51 PM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/586 to approve ingest
Oct 07 08:05:00 PM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696705597.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/586
Oct 07 08:07:37 PM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696705597.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/skylake_avx512/`

trz42 · 2023-10-07T19:12:53Z

Seems zen2 nodes on eX3 are down.

bot: build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11

nessi-bot · 2023-10-07T19:12:55Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T19:12:56Z

Updates by the bot instance AWS-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- submitted job 7783, for details & status see {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)

nessi-bot · 2023-10-07T19:12:56Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T19:12:56Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS arch:x86_64/amd/zen2 repo:nessi-2023.06-swl-deb11 from trz42
- expanded format: build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11
handling command build instance:AWS architecture:x86_64/amd/zen2 repository:nessi-2023.06-swl-deb11 resulted in:
- no jobs were submitted

nessi-bot · 2023-10-07T19:13:03Z

New job on instance AWS-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /mnt/shared/home/nessibot/pilot.nessi.no/PR155/jobs/2023.10/pr_183/7783

date	job status	comment
Oct 07 07:13:02 PM UTC 2023	submitted	job id `7783` awaits release by job manager
Oct 07 07:13:52 PM UTC 2023	released	job awaits launch by Slurm scheduler
Oct 07 07:18:09 PM UTC 2023	running	job `7783` is running
Oct 07 07:30:51 PM UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7783.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1696706904.tar.gz` size: 35 MiB (36850572 bytes) entries: 696 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `AdapterRemoval/2.3.3-GCC-11.3.0.lua` `BEDTools/2.30.0-GCC-11.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `AdapterRemoval/2.3.3-GCC-11.3.0` `BEDTools/2.30.0-GCC-11.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Oct 07 07:36:29 PM UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1696706904.tar.gz` to S3 bucket succeeded
Oct 07 07:52:03 PM UTC 2023	staged	tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1696706904.tar.gz` downloaded to Stratum-0
Oct 07 08:00:34 PM UTC 2023	pr_opened	merge PR https://github.com/NorESSI/staging/pull/582 to approve ingest
Oct 07 08:04:47 PM UTC 2023	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1696706904.tar.gz` approved, see PR https://github.com/NorESSI/staging/pull/582
Oct 07 08:05:54 PM UTC 2023	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1696706904.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/amd/zen2/`

trz42 · 2023-10-07T19:34:11Z

Checklist for building:

Check whether builds for all required architectures succeed (SUCCESS message + reasonably sized tarball)
Check if the PR is up-to-date with the target branch nessi.no-2023.06 in the repository (if not what are the differences)
Assess if all requested changes are sound (checking files changed on GitHub.com)
Verify that all easyconfig/s being built are included with the EB version used (if not why not)
Review changes (if any) needed to get the build(s) succeed (common changes for all architectures, changes for a single architecture, changes because of build environment specifics, etc.)

trz42 · 2023-10-07T19:39:39Z

Target architectures

x86_64-intel-broadwell
x86_64-intel-skylake_avx512
x86_64-intel-cascadelake
x86_64-amd-zen2
x86_64-generic
aarch64-generic

Checklist for deployment/ingestion

at least one tarball for each architecture has been uploaded
- upload for {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment) failed
- instead we use the one from {2023.06}[foss/2022a] add bio packages - set 2 #183 (comment)
at least one tarball for each architecture has been staged
for each architecture one and only one tarball has been approved
for each architecture one and only one tarball was ingested
all tests in the CI have succeeded (rerun failed tests ~ 10 mins after last ingest)
has the package become available via CernVM-FS for all architectures ingested (for lmod cache updates pay attention to timestamp of files)

command & log

command

cd /cvmfs/pilot.nessi.no/versions/2023.06/software/linux ; \
ls -l \
      x86_64/{generic,amd/zen2,intel/[bsc]*}/{software,modules/all}/{AdapterRemoval,BEDTools}/* \
      aarch64/generic/{software,modules/all}/{AdapterRemoval,BEDTools}/*

log

-rw-r--r-- 1 cvmfs cvmfs 1365 Oct  7 18:53 aarch64/generic/modules/all/AdapterRemoval/2.3.3-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1411 Oct  7 18:54 aarch64/generic/modules/all/BEDTools/2.30.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1365 Oct  7 19:25 x86_64/amd/zen2/modules/all/AdapterRemoval/2.3.3-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1411 Oct  7 19:27 x86_64/amd/zen2/modules/all/BEDTools/2.30.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1364 Oct  7 19:04 x86_64/generic/modules/all/AdapterRemoval/2.3.3-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1410 Oct  7 19:06 x86_64/generic/modules/all/BEDTools/2.30.0-GCC-11.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1372 Oct  7 18:56 x86_64/intel/broadwell/modules/all/AdapterRemoval/2.3.3-GCC-11.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1418 Oct  7 18:57 x86_64/intel/broadwell/modules/all/BEDTools/2.30.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1374 Oct  7 19:04 x86_64/intel/cascadelake/modules/all/AdapterRemoval/2.3.3-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1420 Oct  7 19:05 x86_64/intel/cascadelake/modules/all/BEDTools/2.30.0-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1377 Oct  7 19:04 x86_64/intel/skylake_avx512/modules/all/AdapterRemoval/2.3.3-GCC-11.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1423 Oct  7 19:05 x86_64/intel/skylake_avx512/modules/all/BEDTools/2.30.0-GCC-11.3.0.lua

aarch64/generic/software/AdapterRemoval/2.3.3-GCC-11.3.0:
total 14
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 18:53 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 18:53 easybuild
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 18:53 share

aarch64/generic/software/BEDTools/2.30.0-GCC-11.3.0:
total 32
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 18:54 bin
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 18:53 data
dr-xr-xr-x  6 cvmfs cvmfs 4096 Oct  7 18:53 docs
dr-xr-xr-x  3 cvmfs cvmfs 4096 Oct  7 18:54 easybuild
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 18:53 genomes
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 18:53 scripts
dr-xr-xr-x 34 cvmfs cvmfs 4096 Oct  7 18:54 test

x86_64/amd/zen2/software/AdapterRemoval/2.3.3-GCC-11.3.0:
total 14
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 19:25 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:25 easybuild
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 19:25 share

x86_64/amd/zen2/software/BEDTools/2.30.0-GCC-11.3.0:
total 32
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:27 bin
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:25 data
dr-xr-xr-x  6 cvmfs cvmfs 4096 Oct  7 19:25 docs
dr-xr-xr-x  3 cvmfs cvmfs 4096 Oct  7 19:27 easybuild
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:25 genomes
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:25 scripts
dr-xr-xr-x 34 cvmfs cvmfs 4096 Oct  7 19:27 test

x86_64/generic/software/AdapterRemoval/2.3.3-GCC-11.3.0:
total 14
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 19:04 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:04 easybuild
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 19:04 share

x86_64/generic/software/BEDTools/2.30.0-GCC-11.3.0:
total 32
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:06 bin
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:05 data
dr-xr-xr-x  6 cvmfs cvmfs 4096 Oct  7 19:05 docs
dr-xr-xr-x  3 cvmfs cvmfs 4096 Oct  7 19:06 easybuild
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:05 genomes
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:05 scripts
dr-xr-xr-x 34 cvmfs cvmfs 4096 Oct  7 19:06 test

x86_64/intel/broadwell/software/AdapterRemoval/2.3.3-GCC-11.3.0:
total 14
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 18:56 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 18:56 easybuild
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 18:56 share

x86_64/intel/broadwell/software/BEDTools/2.30.0-GCC-11.3.0:
total 32
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 18:57 bin
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 18:56 data
dr-xr-xr-x  6 cvmfs cvmfs 4096 Oct  7 18:56 docs
dr-xr-xr-x  3 cvmfs cvmfs 4096 Oct  7 18:57 easybuild
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 18:56 genomes
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 18:56 scripts
dr-xr-xr-x 34 cvmfs cvmfs 4096 Oct  7 18:57 test

x86_64/intel/cascadelake/software/AdapterRemoval/2.3.3-GCC-11.3.0:
total 14
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 19:04 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:04 easybuild
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 19:04 share

x86_64/intel/cascadelake/software/BEDTools/2.30.0-GCC-11.3.0:
total 32
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:05 bin
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:04 data
dr-xr-xr-x  6 cvmfs cvmfs 4096 Oct  7 19:04 docs
dr-xr-xr-x  3 cvmfs cvmfs 4096 Oct  7 19:05 easybuild
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:04 genomes
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:04 scripts
dr-xr-xr-x 34 cvmfs cvmfs 4096 Oct  7 19:05 test

x86_64/intel/skylake_avx512/software/AdapterRemoval/2.3.3-GCC-11.3.0:
total 14
dr-xr-xr-x 2 cvmfs cvmfs 4096 Oct  7 19:04 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Oct  7 19:04 easybuild
dr-xr-xr-x 4 cvmfs cvmfs 4096 Oct  7 19:04 share

x86_64/intel/skylake_avx512/software/BEDTools/2.30.0-GCC-11.3.0:
total 32
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:05 bin
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:04 data
dr-xr-xr-x  6 cvmfs cvmfs 4096 Oct  7 19:04 docs
dr-xr-xr-x  3 cvmfs cvmfs 4096 Oct  7 19:05 easybuild
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:04 genomes
dr-xr-xr-x  2 cvmfs cvmfs 4096 Oct  7 19:04 scripts
dr-xr-xr-x 34 cvmfs cvmfs 4096 Oct  7 19:05 test

poksumdo

Looks good. Somewhat disappointing to see multiple packages failing on aarch64.

{2023.06}[foss/2022a] add bio packages - set 2

290e3cb

trz42 added the NESSI/2023.06 label Oct 6, 2023

removed BBMap because it failed to build

0a62656

removed BWA, also fails on aarch64/generic

b48487d

trz42 mentioned this pull request Oct 7, 2023

{2023.06}[foss/2022a] add bio packages - set 3 #185

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trz42 added the bot:deploy label Oct 7, 2023

poksumdo approved these changes Oct 7, 2023

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poksumdo merged commit 810107b into NorESSI:nessi.no-2023.06 Oct 7, 2023

trz42 added the ingested label Oct 7, 2023

{2023.06}[foss/2022a] add bio packages - set 2 #183

{2023.06}[foss/2022a] add bio packages - set 2 #183

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