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Jupyter extensions: make sure to run tests (as much as possible) #244492

Merged
merged 6 commits into from
Aug 20, 2023
Merged

Jupyter extensions: make sure to run tests (as much as possible) #244492

merged 6 commits into from
Aug 20, 2023

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GaetanLepage
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Description of changes

When introduced, those packages' tests did not have their tests run.
This PR enables them as much as possible.

Also, I updated python3Packages.nbconvert to its latest version.

Things done
  • Built on platform(s)
    • x86_64-linux
    • aarch64-linux
    • x86_64-darwin
    • aarch64-darwin
  • For non-Linux: Is sandbox = true set in nix.conf? (See Nix manual)
  • Tested, as applicable:
  • Tested compilation of all packages that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD". Note: all changes have to be committed, also see nixpkgs-review usage
  • Tested basic functionality of all binary files (usually in ./result/bin/)
  • 23.11 Release Notes (or backporting 23.05 Release notes)
    • (Package updates) Added a release notes entry if the change is major or breaking
    • (Module updates) Added a release notes entry if the change is significant
    • (Module addition) Added a release notes entry if adding a new NixOS module
  • Fits CONTRIBUTING.md.

@ofborg ofborg bot requested a review from FRidh July 20, 2023 16:01
@GaetanLepage GaetanLepage marked this pull request as draft July 21, 2023 07:18
@GaetanLepage GaetanLepage marked this pull request as ready for review August 11, 2023 06:58
@ofborg ofborg bot requested a review from natsukium August 11, 2023 07:17
@GaetanLepage
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Result of nixpkgs-review pr 244492 run on x86_64-linux 1

82 packages marked as broken and skipped:
  • python310Packages.batchspawner
  • python310Packages.batchspawner.dist
  • python310Packages.dockerspawner
  • python310Packages.dockerspawner.dist
  • python310Packages.jupyterhub
  • python310Packages.jupyterhub-ldapauthenticator
  • python310Packages.jupyterhub-ldapauthenticator.dist
  • python310Packages.jupyterhub-systemdspawner
  • python310Packages.jupyterhub-systemdspawner.dist
  • python310Packages.jupyterhub-tmpauthenticator
  • python310Packages.jupyterhub-tmpauthenticator.dist
  • python310Packages.jupyterhub.dist
  • python310Packages.oauthenticator
  • python310Packages.oauthenticator.dist
  • python310Packages.qiskit
  • python310Packages.qiskit-aer
  • python310Packages.qiskit-aer.dist
  • python310Packages.qiskit-finance
  • python310Packages.qiskit-finance.dist
  • python310Packages.qiskit-ibmq-provider
  • python310Packages.qiskit-ibmq-provider.dist
  • python310Packages.qiskit-ignis
  • python310Packages.qiskit-ignis.dist
  • python310Packages.qiskit-machine-learning
  • python310Packages.qiskit-machine-learning.dist
  • python310Packages.qiskit-nature
  • python310Packages.qiskit-nature.dist
  • python310Packages.qiskit-optimization
  • python310Packages.qiskit-optimization.dist
  • python310Packages.qiskit-terra
  • python310Packages.qiskit-terra.dist
  • python310Packages.qiskit.dist
  • python311Packages.batchspawner
  • python311Packages.batchspawner.dist
  • python311Packages.dalle-mini
  • python311Packages.dalle-mini.dist
  • python311Packages.dockerspawner
  • python311Packages.dockerspawner.dist
  • python311Packages.elegy
  • python311Packages.elegy.dist
  • python311Packages.fastai
  • python311Packages.fastai.dist
  • python311Packages.jupyterhub
  • python311Packages.jupyterhub-ldapauthenticator
  • python311Packages.jupyterhub-ldapauthenticator.dist
  • python311Packages.jupyterhub-systemdspawner
  • python311Packages.jupyterhub-systemdspawner.dist
  • python311Packages.jupyterhub-tmpauthenticator
  • python311Packages.jupyterhub-tmpauthenticator.dist
  • python311Packages.jupyterhub.dist
  • python311Packages.k-diffusion
  • python311Packages.k-diffusion.dist
  • python311Packages.oauthenticator
  • python311Packages.oauthenticator.dist
  • python311Packages.qiskit-aer
  • python311Packages.qiskit-aer.dist
  • python311Packages.qiskit-finance
  • python311Packages.qiskit-finance.dist
  • python311Packages.qiskit-ibmq-provider
  • python311Packages.qiskit-ibmq-provider.dist
  • python311Packages.qiskit-ignis
  • python311Packages.qiskit-ignis.dist
  • python311Packages.qiskit-nature
  • python311Packages.qiskit-nature.dist
  • python311Packages.qiskit-optimization
  • python311Packages.qiskit-optimization.dist
  • python311Packages.qiskit-terra
  • python311Packages.qiskit-terra.dist
  • python311Packages.spacy
  • python311Packages.spacy-loggers
  • python311Packages.spacy-loggers.dist
  • python311Packages.spacy-lookups-data
  • python311Packages.spacy-lookups-data.dist
  • python311Packages.spacy-transformers
  • python311Packages.spacy-transformers.dist
  • python311Packages.spacy.dist
  • python311Packages.textacy
  • python311Packages.textacy.dist
  • python311Packages.textnets
  • python311Packages.textnets.dist
  • python311Packages.treex
  • python311Packages.treex.dist
47 packages failed to build:
  • manim
  • manim.dist
  • pentestgpt
  • pentestgpt.dist
  • python310Packages.bambi
  • python310Packages.bambi.dist
  • python310Packages.dalle-mini
  • python310Packages.dalle-mini.dist
  • python310Packages.datashader
  • python310Packages.datashader.dist
  • python310Packages.elegy
  • python310Packages.elegy.dist
  • python310Packages.jupyter-contrib-nbextensions
  • python310Packages.jupyter-contrib-nbextensions.dist
  • python310Packages.jupyterlab-lsp
  • python310Packages.jupyterlab-lsp.dist
  • python310Packages.langchain
  • python310Packages.langchain.dist
  • python310Packages.layoutparser
  • python310Packages.layoutparser.dist
  • python310Packages.pdfplumber
  • python310Packages.pdfplumber.dist
  • python310Packages.pymc
  • python310Packages.pymc.dist
  • python310Packages.textnets
  • python310Packages.textnets.dist
  • python310Packages.treex
  • python310Packages.treex.dist
  • python310Packages.unstructured-inference
  • python310Packages.unstructured-inference.dist
  • python310Packages.vega
  • python310Packages.vega.dist
  • python311Packages.jupyter-contrib-nbextensions
  • python311Packages.jupyter-contrib-nbextensions.dist
  • python311Packages.jupyterlab-lsp
  • python311Packages.jupyterlab-lsp.dist
  • python311Packages.layoutparser
  • python311Packages.layoutparser.dist
  • python311Packages.pdfplumber
  • python311Packages.pdfplumber.dist
  • python311Packages.unstructured-inference
  • python311Packages.unstructured-inference.dist
  • python311Packages.vega
  • python311Packages.vega.dist
  • tts
  • tts.dist
  • wolfram-notebook
220 packages built:
  • cantor
  • ihaskell
  • jupyter
  • jupyter.dist
  • labplot
  • nbqa
  • nbqa.dist
  • opsdroid
  • opsdroid.dist
  • python310Packages.ansible-kernel
  • python310Packages.ansible-kernel.dist
  • python310Packages.arviz
  • python310Packages.arviz.dist
  • python310Packages.augmax
  • python310Packages.augmax.dist
  • python310Packages.einops
  • python310Packages.einops.dist
  • python310Packages.encodec
  • python310Packages.encodec.dist
  • python310Packages.experiment-utilities
  • python310Packages.experiment-utilities.dist
  • python310Packages.fastai
  • python310Packages.fastai.dist
  • python310Packages.folium
  • python310Packages.folium.dist
  • python310Packages.jupyter
  • python310Packages.jupyter-collaboration
  • python310Packages.jupyter-collaboration.dist
  • python310Packages.jupyter-contrib-core
  • python310Packages.jupyter-contrib-core.dist
  • python310Packages.jupyter-highlight-selected-word
  • python310Packages.jupyter-highlight-selected-word.dist
  • python310Packages.jupyter-lsp
  • python310Packages.jupyter-lsp.dist
  • python310Packages.jupyter-nbextensions-configurator
  • python310Packages.jupyter-nbextensions-configurator.dist
  • python310Packages.jupyter-server
  • python310Packages.jupyter-server-fileid
  • python310Packages.jupyter-server-fileid.dist
  • python310Packages.jupyter-server-mathjax
  • python310Packages.jupyter-server-mathjax.dist
  • python310Packages.jupyter-server.dist
  • python310Packages.jupyter-sphinx
  • python310Packages.jupyter-sphinx.dist
  • python310Packages.jupyter.dist
  • python310Packages.jupyterlab
  • python310Packages.jupyterlab-git
  • python310Packages.jupyterlab-git.dist
  • python310Packages.jupyterlab.dist
  • python310Packages.jupyterlab_launcher
  • python310Packages.jupyterlab_launcher.dist
  • python310Packages.jupyterlab_server
  • python310Packages.jupyterlab_server.dist
  • python310Packages.jupytext
  • python310Packages.jupytext.dist
  • python310Packages.k-diffusion
  • python310Packages.k-diffusion.dist
  • python310Packages.labelbox
  • python310Packages.labelbox.dist
  • python310Packages.livelossplot
  • python310Packages.livelossplot.dist
  • python310Packages.memestra
  • python310Packages.memestra.dist
  • python310Packages.mkdocs-jupyter
  • python310Packages.mkdocs-jupyter.dist
  • python310Packages.nbclassic
  • python310Packages.nbclassic.dist
  • python310Packages.nbconflux
  • python310Packages.nbconflux.dist
  • python310Packages.nbconvert
  • python310Packages.nbconvert.dist
  • python310Packages.nbdev
  • python310Packages.nbdev.dist
  • python310Packages.nbdime
  • python310Packages.nbdime.dist
  • python310Packages.nbexec
  • python310Packages.nbexec.dist
  • python310Packages.nbsmoke
  • python310Packages.nbsmoke.dist
  • python310Packages.nbsphinx
  • python310Packages.nbsphinx.dist
  • python310Packages.nikola
  • python310Packages.nikola.dist
  • python310Packages.nix-kernel
  • python310Packages.nix-kernel.dist
  • python310Packages.notebook
  • python310Packages.notebook-shim
  • python310Packages.notebook-shim.dist
  • python310Packages.notebook.dist
  • python310Packages.notedown
  • python310Packages.notedown.dist
  • python310Packages.osmnx
  • python310Packages.osmnx.dist
  • python310Packages.phik
  • python310Packages.phik.dist
  • python310Packages.pweave
  • python310Packages.pweave.dist
  • python310Packages.pyls-memestra
  • python310Packages.pyls-memestra.dist
  • python310Packages.pymoo
  • python310Packages.pymoo.dist
  • python310Packages.qgrid
  • python310Packages.qgrid.dist
  • python310Packages.spacy
  • python310Packages.spacy-loggers
  • python310Packages.spacy-loggers.dist
  • python310Packages.spacy-lookups-data
  • python310Packages.spacy-lookups-data.dist
  • python310Packages.spacy-transformers
  • python310Packages.spacy-transformers.dist
  • python310Packages.spacy.dist
  • spyder (python310Packages.spyder)
  • spyder.dist (python310Packages.spyder.dist)
  • python310Packages.textacy
  • python310Packages.textacy.dist
  • python310Packages.thinc
  • python310Packages.thinc.dist
  • python310Packages.unstructured-api-tools
  • python310Packages.unstructured-api-tools.dist
  • python310Packages.vector
  • python310Packages.vector.dist
  • python310Packages.wasabi
  • python310Packages.wasabi.dist
  • python310Packages.xarray-einstats
  • python310Packages.xarray-einstats.dist
  • python311Packages.ansible-kernel
  • python311Packages.ansible-kernel.dist
  • python311Packages.augmax
  • python311Packages.augmax.dist
  • python311Packages.einops
  • python311Packages.einops.dist
  • python311Packages.encodec
  • python311Packages.encodec.dist
  • python311Packages.experiment-utilities
  • python311Packages.experiment-utilities.dist
  • python311Packages.folium
  • python311Packages.folium.dist
  • python311Packages.jupyter
  • python311Packages.jupyter-collaboration
  • python311Packages.jupyter-collaboration.dist
  • python311Packages.jupyter-contrib-core
  • python311Packages.jupyter-contrib-core.dist
  • python311Packages.jupyter-highlight-selected-word
  • python311Packages.jupyter-highlight-selected-word.dist
  • python311Packages.jupyter-lsp
  • python311Packages.jupyter-lsp.dist
  • python311Packages.jupyter-nbextensions-configurator
  • python311Packages.jupyter-nbextensions-configurator.dist
  • python311Packages.jupyter-server
  • python311Packages.jupyter-server-fileid
  • python311Packages.jupyter-server-fileid.dist
  • python311Packages.jupyter-server-mathjax
  • python311Packages.jupyter-server-mathjax.dist
  • python311Packages.jupyter-server.dist
  • python311Packages.jupyter-sphinx
  • python311Packages.jupyter-sphinx.dist
  • python311Packages.jupyter.dist
  • python311Packages.jupyterlab
  • python311Packages.jupyterlab-git
  • python311Packages.jupyterlab-git.dist
  • python311Packages.jupyterlab.dist
  • python311Packages.jupyterlab_launcher
  • python311Packages.jupyterlab_launcher.dist
  • python311Packages.jupyterlab_server
  • python311Packages.jupyterlab_server.dist
  • python311Packages.jupytext
  • python311Packages.jupytext.dist
  • python311Packages.labelbox
  • python311Packages.labelbox.dist
  • python311Packages.livelossplot
  • python311Packages.livelossplot.dist
  • python311Packages.memestra
  • python311Packages.memestra.dist
  • python311Packages.mkdocs-jupyter
  • python311Packages.mkdocs-jupyter.dist
  • python311Packages.nbclassic
  • python311Packages.nbclassic.dist
  • python311Packages.nbconflux
  • python311Packages.nbconflux.dist
  • python311Packages.nbconvert
  • python311Packages.nbconvert.dist
  • python311Packages.nbdev
  • python311Packages.nbdev.dist
  • python311Packages.nbdime
  • python311Packages.nbdime.dist
  • python311Packages.nbexec
  • python311Packages.nbexec.dist
  • python311Packages.nbsmoke
  • python311Packages.nbsmoke.dist
  • python311Packages.nbsphinx
  • python311Packages.nbsphinx.dist
  • python311Packages.nikola
  • python311Packages.nikola.dist
  • python311Packages.nix-kernel
  • python311Packages.nix-kernel.dist
  • python311Packages.notebook
  • python311Packages.notebook-shim
  • python311Packages.notebook-shim.dist
  • python311Packages.notebook.dist
  • python311Packages.notedown
  • python311Packages.notedown.dist
  • python311Packages.osmnx
  • python311Packages.osmnx.dist
  • python311Packages.pweave
  • python311Packages.pweave.dist
  • python311Packages.pyls-memestra
  • python311Packages.pyls-memestra.dist
  • python311Packages.qgrid
  • python311Packages.qgrid.dist
  • python311Packages.spyder
  • python311Packages.spyder.dist
  • python311Packages.thinc
  • python311Packages.thinc.dist
  • python311Packages.unstructured-api-tools
  • python311Packages.unstructured-api-tools.dist
  • python311Packages.wasabi
  • python311Packages.wasabi.dist
  • quarto
  • sage
  • sageWithDoc

@GaetanLepage
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Lately I have been looking for the reasons why those packages fail to build and it doesn't seem to be related to this update/PR.

@ofborg ofborg bot requested a review from natsukium August 19, 2023 11:12
natsukium
natsukium approved these changes Aug 19, 2023
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I'll merge it when CI passes.

@natsukium natsukium merged commit 193bf2f into NixOS:master Aug 20, 2023
8 checks passed
@GaetanLepage GaetanLepage deleted the jupyter-extensions branch August 20, 2023 09:02
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@natsukium natsukium natsukium approved these changes

@figsoda figsoda Awaiting requested review from figsoda

@FRidh FRidh Awaiting requested review from FRidh

@SuperSandro2000 SuperSandro2000 Awaiting requested review from SuperSandro2000

@K900 K900 Awaiting requested review from K900

@dotlambda dotlambda Awaiting requested review from dotlambda

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@GaetanLepage @SuperSandro2000 @natsukium