Fix sphinx apidoc exclude

docs/source/conf.py

@@ -207,21 +207,14 @@ def __call__(self, filename):
 
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
-exclude_patterns = ['_build', 'test.py', "../../src/pynwb/retinotopy.py",]
+exclude_patterns = ['_build', 'test.py']
 
 # List of patterns, relative to source directory, of modules to be
 # excluded by apidoc when generating rst files.
 apidoc_exclude = [
     "../../src/pynwb/retinotopy.py",
 ]
 
-# # This value contains a list of modules to be mocked up. This is useful
-# # when some external dependencies are not met at build time and break the
-# # building process.
-# autodoc_mock_imports = [
-#     'pynwb.retinotopy',
-# ]
-
 # The reST default role (used for this markup: `text`) to use for all documents.
 # default_role = None
 
@@ -424,7 +417,8 @@ def run_apidoc(_):
     out_dir = os.path.dirname(__file__)
     src_dir = os.path.join(out_dir, '../../src')
     sys.path.append(src_dir)
-    apidoc_main(['-f', '-e', '--no-toc', '-o', out_dir, src_dir, *apidoc_exclude])
+    apidoc_exclude_abs = [os.path.join(out_dir, f) for f in apidoc_exclude]
+    apidoc_main(['-f', '-e', '--no-toc', '-o', out_dir, src_dir, *apidoc_exclude_abs])
 
 
 from abc import abstractproperty