Test fix to conda circleci (#1559)

* Test fix to conda circleci * fix * Fix * Try fix * FIx * Update changelog, uncomment extra runs
NeurodataWithoutBorders · Sep 27, 2022 · d901388 · d901388
1 parent 787afc7
commit d901388
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Showing 3 changed files with 21 additions and 6 deletions.
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -96,29 +96,40 @@ references:
       - run:
           name: Configure conda
           command: |
-            pip install --upgrade pip
-            conda update -n base -c defaults conda
+            conda install -n base -c defaults conda=4.13.0
             conda config --set always_yes yes --set changeps1 no
             conda config --add channels conda-forge
-            conda install python=$CONDA_PYTHON_VER
+            conda create --name test python=$CONDA_PYTHON_VER --yes
+            conda init bash
+            source ~/.bashrc
+            conda activate test
+            pip install --upgrade pip
             # work around incompatibilities between virtualenv & importlib-metadata
             if [[ "${TEST_TOX_ENV}" == *"py37"* ]]; then
               conda install "importlib-metadata=1.7"
             else
               conda install importlib-metadata
             fi
             conda install tox
+            conda list
+            pip list
       - run:
           name: Run the tests
           command: |
+            source ~/.bashrc
+            conda activate test
             tox -e $TEST_TOX_ENV
       - run:
           name: Build wheel and source distribution
           command: |
+            source ~/.bashrc
+            conda activate test
             tox -e $BUILD_TOX_ENV
       - run:
           name: Test installation from a wheel
           command: |
+            source ~/.bashrc
+            conda activate test
             tox -e $TEST_WHEELINSTALL_ENV --recreate --installpkg dist/*-none-any.whl
 
   gallery-steps: &gallery-steps

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,11 +5,12 @@
 ### Bug fixes
 - Fixed bug in ``pynwb.testing.mock.file.mock_NWBFile`` to identifier UUID to string. @oruebel
   [#1557](https://github.com/NeurodataWithoutBorders/pynwb/pull/1557)
+- Fixed CircleCI configuration. @rly [#1559](https://github.com/NeurodataWithoutBorders/pynwb/pull/1559)
 
 ## PyNWB 2.1.1 (September 1, 2022)
 
 ### Documentation and tutorial enhancements:
-- Added support for explicit ordering of sphinx gallery tutorials in the docs. @oruebel 
+- Added support for explicit ordering of sphinx gallery tutorials in the docs. @oruebel
   [#1504](https://github.com/NeurodataWithoutBorders/pynwb/pull/1504), @bdichter
   [#1495](https://github.com/NeurodataWithoutBorders/pynwb/pull/1495)
 - Added developer guide on how to create a new tutorial. @oruebel
@@ -39,7 +40,7 @@
   [#1548](https://github.com/NeurodataWithoutBorders/pynwb/pull/1548)
 - Updated requirements, including allowing numpy 1.23. @rly
   [#1550](https://github.com/NeurodataWithoutBorders/pynwb/pull/1550)
-- Enhanced docs for ``LabMetaData`` to clarify its usage. @oruebel 
+- Enhanced docs for ``LabMetaData`` to clarify its usage. @oruebel
   [#1546](https://github.com/NeurodataWithoutBorders/pynwb/pull/1546)
 - Add testing/mock, which provides mock neurodata objects for testing. @bendichter
   [#1454](https://github.com/NeurodataWithoutBorders/pynwb/pull/1454)

diff --git a/tox.ini b/tox.ini
@@ -7,8 +7,11 @@
 envlist = py37, py38, py39
 
 [testenv]
+download = True
 usedevelop = True
-setenv = PYTHONDONTWRITEBYTECODE = 1
+setenv =
+  PYTHONDONTWRITEBYTECODE = 1
+  VIRTUALENV_PIP = 22.2.2
 install_command =
     pip install -U {opts} {packages}