Merge branch 'dev' into find_all_of_class

NeurodataWithoutBorders · Jul 26, 2023 · a441a6d · a441a6d
2 parents bbcdf82 + 65c25ab
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diff --git a/docs/gallery/domain/ecephys.py b/docs/gallery/domain/ecephys.py
@@ -15,6 +15,10 @@
 
 It is recommended to cover :ref:`basics` before this tutorial.
 
+.. note:: It is recommended to check if your source data is supported by
+  `NeuroConv Extracellular Electrophysiology Gallery <https://neuroconv.readthedocs.io/en/main/conversion_examples_gallery/conversion_example_gallery.html#extracellular-electrophysiology>`_.
+  If it is supported, it is recommended to use NeuroConv to convert your data.
+
 The following examples will reference variables that may not be defined within the block they are used in. For
 clarity, we define them here:
 """

diff --git a/docs/gallery/domain/ophys.py b/docs/gallery/domain/ophys.py
@@ -14,6 +14,10 @@
 
 It is recommended to cover :ref:`basics` before this tutorial.
 
+.. note:: It is recommended to check if your source data is supported by
+  `NeuroConv Optical Physiology Gallery <https://neuroconv.readthedocs.io/en/main/conversion_examples_gallery/conversion_example_gallery.html#optical-physiology>`_.
+  If it is supported, it is recommended to use NeuroConv to convert your data.
+
 The following examples will reference variables that may not be defined within the block they are used in. For
 clarity, we define them here:
 """

diff --git a/docs/gallery/general/plot_file.py b/docs/gallery/general/plot_file.py
@@ -275,10 +275,9 @@
 ####################
 # :py:class:`~pynwb.base.TimeSeries` objects can be added directly to :py:class:`~pynwb.file.NWBFile` using:
 #
-# * :py:meth:`~pynwb.file.NWBFile.add_acquisition` to  add *acquisition* data (raw, acquired data that should never
-#   change),
-# * :py:meth:`~pynwb.file.NWBFile.add_stimulus` to add *stimulus* data, or
-# * :py:meth:`~pynwb.file.NWBFile.add_stimulus_template` to store *stimulus templates*.
+# * :py:meth:`.NWBFile.add_acquisition` to  add *acquisition* data (raw, acquired data that should never change),
+# * :py:meth:`.NWBFile.add_stimulus` to add *stimulus* data, or
+# * :py:meth:`.NWBFile.add_stimulus_template` to store *stimulus templates*.
 #
 
 nwbfile.add_acquisition(time_series_with_timestamps)
@@ -383,6 +382,7 @@
     name="behavior", description="processed behavioral data"
 )
 behavior_module.add(position_obj)
+behavior_module
 
 ####################
 #
@@ -617,6 +617,8 @@
 
 nwbfile.add_time_intervals(sleep_stages)
 
+sleep_stages.to_dataframe()
+
 ####################
 # Now we overwrite the file with all of the data
 

diff --git a/docs/source/_static/trials_example.png b/docs/source/_static/trials_example.png