Add aws_region to HDF5IO.load_namespaces calls

NeurodataWithoutBorders · May 18, 2024 · 9f92f23 · 9f92f23
1 parent 7979705
commit 9f92f23
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Showing 2 changed files with 8 additions and 3 deletions.
diff --git a/src/pynwb/__init__.py b/src/pynwb/__init__.py
@@ -266,7 +266,7 @@ def __init__(self, **kwargs):
 
         if load_namespaces:
             tm = get_type_map()
-            super().load_namespaces(tm, path, file=file_obj, driver=driver)
+            super().load_namespaces(tm, path, file=file_obj, driver=driver, aws_region=aws_region)
             manager = BuildManager(tm)
 
             # XXX: Leaving this here in case we want to revert to this strategy for

diff --git a/src/pynwb/validate.py b/src/pynwb/validate.py
@@ -30,7 +30,7 @@ def _validate_helper(io: HDMFIO, namespace: str = CORE_NAMESPACE) -> list:
 
 
 def _get_cached_namespaces_to_validate(
-    path: str, driver: Optional[str] = None
+    path: str, driver: Optional[str] = None, aws_region: Optional[str] = None,
 ) -> Tuple[List[str], BuildManager, Dict[str, str]]:
     """
     Determine the most specific namespace(s) that are cached in the given NWBFile that can be used for validation.
@@ -58,7 +58,12 @@ def _get_cached_namespaces_to_validate(
     catalog = NamespaceCatalog(
         group_spec_cls=NWBGroupSpec, dataset_spec_cls=NWBDatasetSpec, spec_namespace_cls=NWBNamespace
     )
-    namespace_dependencies = NWBHDF5IO.load_namespaces(namespace_catalog=catalog, path=path, driver=driver)
+    namespace_dependencies = NWBHDF5IO.load_namespaces(
+        namespace_catalog=catalog,
+        path=path,
+        driver=driver,
+        aws_region=aws_region
+    )
 
     # Determine which namespaces are the most specific (i.e. extensions) and validate against those
     candidate_namespaces = set(namespace_dependencies.keys())