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NeurodataWithoutBorders · Apr 10, 2024 · 2dcc091 · 2dcc091
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diff --git a/docs/gallery/general/plot_configurator.py b/docs/gallery/general/plot_configurator.py
@@ -1,75 +1,19 @@
-from datetime import datetime
-from uuid import uuid4
-from hdmf.term_set import TermSetWrapper, TermSet
-
-import numpy as np
-from dateutil import tz
-
-from pynwb import NWBHDF5IO, NWBFile
-from pynwb.behavior import Position, SpatialSeries
-from pynwb.file import Subject
-from pynwb import unload_type_config, load_type_config
-
-load_type_config()
-session_start_time = datetime(2018, 4, 25, 2, 30, 3, tzinfo=tz.gettz("US/Pacific"))
-terms = TermSet(term_schema_path='/Users/mavaylon/Research/NWB/hdmf/docs/gallery/example_term_set.yaml')
+# from datetime import datetime
+# from uuid import uuid4
+# from hdmf.term_set import TermSetWrapper, TermSet
 #
-nwbfile = NWBFile(
-    session_description="Mouse exploring an open field",  # required
-    identifier=str(uuid4()),  # required
-    session_start_time=session_start_time,  # required
-    session_id="session_1234",  # optional
-    experimenter=[
-        "Ryan Ly",
-    ],  # optional
-    lab="Bag End Laboratory",  # optional
-    institution="University of My Institution",  # optional
-    experiment_description="I went on an adventure to reclaim vast treasures.",  # optional
-    related_publications="DOI:10.1016/j.neuron.2016.12.011",  # optional
-)
-subject = Subject(
-    subject_id="01",
-    age="One shouldn't ask",
-    description="A human.",
-    species="Homo sapiens",
-    sex="M",
-)
-
-nwbfile.subject = subject
-
-device = nwbfile.create_device(
-    name="array", description="the best array", manufacturer="Probe Company 9000"
-)
-
-nwbfile.add_electrode_column(name="label", description="label of electrode")
-
-nshanks = 4
-nchannels_per_shank = 3
-electrode_counter = 0
-
-for ishank in range(nshanks):
-    # create an electrode group for this shank
-    electrode_group = nwbfile.create_electrode_group(
-        name="shank{}".format(ishank),
-        description="electrode group for shank {}".format(ishank),
-        device=device,
-        location='Amygdala'
-    )
-    # add electrodes to the electrode table
-    for ielec in range(nchannels_per_shank):
-        nwbfile.add_electrode(
-            group=electrode_group,
-            label="shank{}elec{}".format(ishank, ielec),
-            location='Amygdala'
-        )
-        electrode_counter += 1
-
-breakpoint()
-# # nwbfile.subject = subject
-# # breakpoint()
-# unload_type_config()
-# load_type_config()
+# import numpy as np
+# from dateutil import tz
 #
+# from pynwb import NWBHDF5IO, NWBFile
+# from pynwb.behavior import Position, SpatialSeries
+# from pynwb.file import Subject
+# from pynwb import unload_type_config, load_type_config
+#
+# load_type_config()
+# session_start_time = datetime(2018, 4, 25, 2, 30, 3, tzinfo=tz.gettz("US/Pacific"))
+# terms = TermSet(term_schema_path='/Users/mavaylon/Research/NWB/hdmf/docs/gallery/example_term_set.yaml')
+# #
 # nwbfile = NWBFile(
 #     session_description="Mouse exploring an open field",  # required
 #     identifier=str(uuid4()),  # required
@@ -83,13 +27,69 @@
 #     experiment_description="I went on an adventure to reclaim vast treasures.",  # optional
 #     related_publications="DOI:10.1016/j.neuron.2016.12.011",  # optional
 # )
-#
-#
 # subject = Subject(
-#     subject_id="001",
-#     age="P90D",
-#     description="mouse 5",
-#     species="Mus musculus",
+#     subject_id="01",
+#     age="One shouldn't ask",
+#     description="A human.",
+#     species="Homo sapiens",
 #     sex="M",
 # )
+#
+# nwbfile.subject = subject
+#
+# device = nwbfile.create_device(
+#     name="array", description="the best array", manufacturer="Probe Company 9000"
+# )
+#
+# nwbfile.add_electrode_column(name="label", description="label of electrode")
+#
+# nshanks = 4
+# nchannels_per_shank = 3
+# electrode_counter = 0
+#
+# for ishank in range(nshanks):
+#     # create an electrode group for this shank
+#     electrode_group = nwbfile.create_electrode_group(
+#         name="shank{}".format(ishank),
+#         description="electrode group for shank {}".format(ishank),
+#         device=device,
+#         location='Amygdala'
+#     )
+#     # add electrodes to the electrode table
+#     for ielec in range(nchannels_per_shank):
+#         nwbfile.add_electrode(
+#             group=electrode_group,
+#             label="shank{}elec{}".format(ishank, ielec),
+#             location='Amygdala'
+#         )
+#         electrode_counter += 1
+#
 # breakpoint()
+# # # nwbfile.subject = subject
+# # # breakpoint()
+# # unload_type_config()
+# # load_type_config()
+# #
+# # nwbfile = NWBFile(
+# #     session_description="Mouse exploring an open field",  # required
+# #     identifier=str(uuid4()),  # required
+# #     session_start_time=session_start_time,  # required
+# #     session_id="session_1234",  # optional
+# #     experimenter=[
+# #         "Ryan Ly",
+# #     ],  # optional
+# #     lab="Bag End Laboratory",  # optional
+# #     institution="University of My Institution",  # optional
+# #     experiment_description="I went on an adventure to reclaim vast treasures.",  # optional
+# #     related_publications="DOI:10.1016/j.neuron.2016.12.011",  # optional
+# # )
+# #
+# #
+# # subject = Subject(
+# #     subject_id="001",
+# #     age="P90D",
+# #     description="mouse 5",
+# #     species="Mus musculus",
+# #     sex="M",
+# # )
+# # breakpoint()