Update to ruff, update workflow versions #1271
Workflow file for this run
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name: Run code coverage | |
on: | |
push: | |
branches: | |
- dev | |
tags-ignore: # exclude tags created by "ci_addons publish_github_release" | |
- 'latest' | |
- 'latest-tmp' | |
pull_request: | |
workflow_dispatch: | |
jobs: | |
run-coverage: | |
name: ${{ matrix.os }} | |
runs-on: ${{ matrix.os }} | |
# TODO handle forks | |
# run pipeline on either a push event or a PR event on a fork | |
# if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
defaults: | |
run: | |
shell: bash | |
strategy: | |
matrix: | |
os: [ubuntu-latest, macos-latest, windows-latest] | |
env: | |
OS: ${{ matrix.os }} | |
PYTHON: '3.12' | |
steps: | |
- name: Cancel non-latest runs | |
uses: styfle/[email protected] | |
with: | |
all_but_latest: true | |
access_token: ${{ github.token }} | |
- uses: actions/checkout@v4 | |
with: | |
submodules: 'recursive' | |
fetch-depth: 0 # tags are required for versioneer to determine the version | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ env.PYTHON }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install -r requirements-dev.txt -r requirements.txt | |
# - name: Install optional dependencies | |
# if: ${{ matrix.opt_req }} | |
# run: python -m pip install -r requirements-opt.txt | |
- name: Install package | |
run: | | |
python -m pip install -e . # must install in editable mode for coverage to find sources | |
python -m pip list | |
- name: Run unit tests and generate coverage report | |
run: | | |
python -m coverage run test.py --pynwb | |
python -m coverage xml # codecov uploader requires xml format | |
python -m coverage report -m | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v4 | |
with: | |
flags: unit | |
files: coverage.xml | |
fail_ci_if_error: true | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
- name: Run integration tests and generate coverage report | |
run: | | |
python -m coverage run -p test.py --integration --validation-module --backwards | |
# validation CLI tests generate separate .coverage files that need to be merged | |
python -m coverage combine | |
python -m coverage xml # codecov uploader requires xml format | |
python -m coverage report -m | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v4 | |
with: | |
flags: integration | |
files: coverage.xml | |
fail_ci_if_error: true | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |