Run NWB Inspector tests #1093
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Run NWB Inspector tests | |
on: | |
pull_request: | |
schedule: | |
- cron: '0 5 * * *' # once per day at midnight ET | |
workflow_dispatch: | |
jobs: | |
run-tests: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Cancel non-latest runs | |
uses: styfle/[email protected] | |
with: | |
all_but_latest: true | |
access_token: ${{ github.token }} | |
- uses: actions/checkout@v3 | |
with: | |
submodules: 'recursive' | |
fetch-depth: 0 # tags are required for versioneer to determine the version | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: '3.11' | |
- name: Update pip | |
run: python -m pip install --upgrade pip | |
- name: Clone NWB Inspector and install dev branch of PyNWB | |
run: | | |
python -m pip list | |
git clone https://github.com/NeurodataWithoutBorders/nwbinspector.git | |
cd nwbinspector | |
python -m pip install -r requirements.txt pytest | |
# must install in editable mode for coverage to find sources | |
python -m pip install -e . # this might install a pinned version of pynwb instead of the current one | |
cd .. | |
python -m pip uninstall -y pynwb # uninstall the pinned version of pynwb | |
python -m pip install . # reinstall current branch of pynwb | |
python -m pip list | |
- name: Run NWB Inspector tests on NWB Inspector dev branch | |
run: | | |
cd nwbinspector | |
pytest |