Pin Zarr for tests

.github/workflows/dev-gallery.yml

@@ -22,9 +22,8 @@ jobs:
           pip install pytest-cov
       - name: Install package
         run: |
-          pip install -e .
+          pip install -e ".[dandi]"
           pip install git+https://github.com/neurodatawithoutborders/pynwb@dev
-          pip install dandi
       - name: Download testing data and set config path
         run: |
           dandi download "https://gui-staging.dandiarchive.org/#/dandiset/204919"

.github/workflows/streaming-tests.yml

@@ -23,9 +23,7 @@ jobs:
         run: pip install pytest
 
       - name: Install package
-        run: |
-          pip install .
-          pip install dandi
+        run: pip install ".[dandi]"
       - name: Install HDMF-zarr # temporary
         run: pip install hdmf-zarr
       - name: Install latest HDMF # temporary

.github/workflows/testing.yml

@@ -29,9 +29,7 @@ jobs:
           pip install pytest-cov
 
       - name: Install package
-        run: |
-          pip install .
-          pip install dandi
+        run: pip install ".[dandi]"
       - name: Download testing data and set config path
         run: |
           dandi download "https://gui-staging.dandiarchive.org/#/dandiset/204919"

.github/workflows/version-gallery.yml

@@ -26,9 +26,8 @@ jobs:
           pip install pytest-cov
       - name: Install package
         run: |
-          pip install -e .
+          pip install -e ".[dandi]"
           pip install pynwb==${{ matrix.pynwb-version }}
-          pip install dandi
       - name: Download testing data and set config path
         run: |
           dandi download "https://gui-staging.dandiarchive.org/#/dandiset/204919"

setup.py

@@ -32,7 +32,8 @@
     package_dir={"": "src"},
     include_package_data=True,  # Includes files described in MANIFEST.in in the installation
     install_requires=install_requires,
-    extras_require=dict(dandi=["dandi>=0.39.2"], zarr=["hdmf_zarr>=0.3.0"]),
+    # zarr<2.18.0 because of https://github.com/NeurodataWithoutBorders/nwbinspector/pull/460
+    extras_require=dict(dandi=["dandi>=0.39.2", "zarr<2.18.0"], zarr=["hdmf_zarr>=0.3.0", "zarr<2.18.0"]),
     entry_points={"console_scripts": ["nwbinspector=nwbinspector.nwbinspector:inspect_all_cli"]},
     license="BSD-3-Clause",
     classifiers=[