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update for new release
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CodyCBakerPhD authored Jun 28, 2023
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29 changes: 27 additions & 2 deletions CHANGELOG.md
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# Upcoming

# v0.4.29

* Support for Python 3.7 has officially been dropped by the NWB Inspector. Please use Python 3.8 and above. [#380](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/380)

### Fixes
* `check_time_interval_time_columns` now only checks for `start_time` with `is_ascending_series` . [#382](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/382)

* `check_time_interval_time_columns` now only checks for `start_time` with `is_ascending_series`. [#382](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/382)

* `is_acending_series` no longer asserts series to be strictly monotonic. [#374](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/374)



# v0.4.28

### Pending Deprecation (API)

* To reduce ambiguity of the new intermediate workflow calls in the API, `inspect_nwb` will be deprecated in the next major release. It is replaced by either `inspect_nwbfile` (applied to a written file on disk) or `inspect_nwbfile_object` (an open object in memory). [#364](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/364)

### New Checks

* Added support for new options to `subject.sex` (`XX` or `XO`) conditional on the `subject.species` being either "C. elegens" or "Caenorhabditis elegens". [#353](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/353)

### Improvements

* Added an intermediate workflow to the main `nwbinspector` call pattern, named `inspect_nwbfile_object`. [#364](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/364)



# v0.4.27

### Fixes

* Added a false positive skip condition to `check_binary_columns` when applied to special tables with pre-defined columns, such as the `electrodes` of `Units`. [#349](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/349)



# v0.4.26

### Fixes

* Added a false positive skip condition to `check_timestamps_match_first_dimension` when applied to an `ImageSeries` that is using an `external_file` and therefore has an empty array set to `data`, but could have non-empty irregular `timestamps` for the video. [PR #335](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/335)

* Fixed the skip condition for `images` checks that were incorrectly run when using PyNWB v2.0.0. [PR #341](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/341)



# v0.4.25

### Improvements

* The version of the NWB Inspector can now be returned directly from the CLI via the `--version` flag. [PR # 333](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/333)



# v0.4.24

### Dependencies

* Loosened upper bound of numpy version. [PR # 330](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/330)


# v0.4.23

### New Checks

* Added check `check_index_series_points_to_image` to additionally about future deprecation of `indexed_timeseries` linked in `IndexSeries`. [# 322](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/322)



# v0.4.22

### Fixes

* Add a special skip condition to `check_timestamps_match_first_dimension` when an `IndexSeries` uses an `ImageSeries` as a target. [PR #321](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/321)



# v0.4.21

### New Checks
* Added check for unique ids for DynamicTables. [PR #316](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/316)

* Added check for unique ids for DynamicTables. [PR #316](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/316)

### Fixes

* Fix `check_subject_proper_age_range` to parse years. [PR #314](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/314)

* Write a custom `get_data_shape` method that does not return `maxshape`, which fixes errors in parsing shape. [PR #315](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/315)


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### Improvements

* Added compression size consideration to `check_image_series_size`. [PR #311](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/311)

* Added false positive skip condition for `check_image_series_size` for `TwoPhotonSeries` neurodata types. [PR #301](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/301)

### Testing
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* Fixed issue in `run_checks` following [PR #303](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/303) that prevented iteration over certain check output types. [PR #306](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/306)



# v0.4.19

### Fixes
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