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124 changes: 0 additions & 124 deletions HCK21_2024_Janelia_NDRH/README.md
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# NeuroDataReHack 2024
## *Generate new insights from existing neurophysiology data through secondary analysis*

[//]: # (* [Report](#report))
* [Dates and Location](#dates-and-location)
* [Objective](#objective)
* [Logistics](#logistics)
* [Organizing Committee](#organizing-committee)
* [Resources](#resources)
* [What to bring?](#what-to-bring)
* [Schedule](#schedule)
* [Disclaimer](#disclaimer)

[//]: # (* [Eligibility](#eligibility))
[//]: # (* [Application](#application))


## Dates and Location

- **Dates:** July 8-12, 2024
- **Location:** [HHMI Janelia Research Campus](https://www.janelia.org/), 19700 Helix Dr, Ashburn, VA 20147,
[Openstreetmap](https://www.openstreetmap.org/?mlat=39.0708&mlon=-77.4655#map=14/39.0708/-77.4655)
[Directions](https://www.janelia.org/directions)

## Objective
[The DANDI Archive](http://dandiarchive.org) now has 199+ neurophysiology datasets in the
[Neurodata Without Borders](http://nwb.org) format spanning many species, brain areas, task types, and imaging
modalities. These include high-value datasets, e.g. from [Allen Institute OpenScope](https://dandiarchive.org/dandiset/search?search=openscope), the [MICrONS project](https://dandiarchive.org/dandiset/000402), and the
[International Brain Laboratory Brain Wide Map](https://dandiarchive.org/dandiset/000409), as well as diverse contributions from neuroscience labs around the world. In this
workshop, we will teach attendees about the open neurophysiology datasets available on the DANDI Archive and train
them on how to maximally utilize the archive and the NWB standard to incorporate existing data into their scientific
workflows. Feedback from attendees will be used to improve the software and data standard to better enable
reanalysis workflows.


Prior to the workshop, we are organizing [Open Neurodata Showcase](../HCK20_2024_OpenNeurodataShowcase/README.md) where attendees can meet the contributors behind the neurophysiology datasets and explore virtual posters. Visit the [event page](../HCK20_2024_OpenNeurodataShowcase/README.md#application) to sign up
and read more about this feature event.


Example projects include but are not limited to:
* Determine whether your result is present in another species or brain area.
* Showcase the capabilities of your tool or analysis on existing data from another lab.
* Explore follow-up questions to a study.
* Create educational content that uses open data.

<!--
Following the event, participants will be invited to apply for a Kavli Foundation Neurodata Discovery Award, which
awards $50,000 (USD) of funding to continue data reanalysis projects that come out of the NeuroDataReHack event. Details about the Kavli Foundation Neurodata Discovery Award will be provided closer to the event.
-->
This event will primarily focus on analyzing existing data in NWB and on DANDI, **not** converting data to NWB. If
you are interested in learning how to convert data, consider signing up for an NWB User Days event.

<!--
## Eligibility

This course is intended for PhD students, postdoctoral researchers, principal investigators, or similar.
Applicants should have basic programming experience in Python or MATLAB and experience with neurophysiology research.


## Application

Space for the event is limited. Apply to attend NeuroDataReHack 2024 [here](https://forms.gle/tzumwuVgrkdD4zm36).

* Application deadline: March 10
* Notification of admission decisions: April 1

-->

## Logistics

Thanks to the generous sponsorship of The Janelia Research Campus, this event will be free to participants:
* There is no registration or application fee.
* Participants will be provided a private room at Janelia Research Campus for the duration of this event,
checking in on Sunday, July 7, and checking out on Friday, July 12 or Saturday, July 13.
* Breakfast, lunch, dinner, and coffee breaks will be provided.
* You will be responsible for booking your own flight and transportation to Janelia Research Campus.
* You will be responsible for determining visa and/or healthcare requirements for travel to the United States.

## Organizing Committee

**Program chairs:**
* Benjamin Dichter, CatalystNeuro
* Oliver Rübel, Lawrence Berkeley National Laboratory
* Ryan Ly, Lawrence Berkeley National Laboratory

## Resources

Resources will be posted here to help participants prepare for the event.

* A report of the first NeuroDataReHack event: ([PDF](../HCK14_2022_Seattle_RH/report/Report_Neurodata_Rehack_v2.pdf))
* A report of the second NeuroDataReHack event: ([PDF](../HCK16_2023_Granada_RH/report/Report__NeuroDataReHack_2023.pdf))
* Recordings of talks will be made available on the [NWB Youtube channel](https://www.youtube.com/channel/UCfD_mU-EFz135a9TpNFJP5A).

## What to bring?

Bring a laptop with appropriate software installed. Python should be installed and MATLAB is optional. For
instructions on how to install PyNWB, see
[the PyNWB documentation](https://pynwb.readthedocs.io/en/stable/install_users.html#installing-pynwb). For instructions
on how to install MatNWB, see
[the MatNWB documentation](https://github.com/NeurodataWithoutBorders/matnwb/blob/master/README.md)

## Schedule
Tentative schedule:

<img align="center" alt="Agenda NeuroDataReHack 2023" src="AgendaNeuroDataReHack2024.png" width="870">

[PDF](AgendaNeuroDataReHack2024.pdf)

## Disclaimer

This website and related content were prepared as an account of or to expedite work sponsored at least in part by
the United States Government. While we strive to provide correct information, neither the United States Government
nor any agency thereof, nor The Regents of the University of California, nor any of their employees, makes any
warranty, express or implied, or assumes any legal responsibility for the accuracy, completeness, or usefulness of
any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately
owned rights.

Reference herein to any specific commercial product, process, or service by its trade name, trademark, manufacturer,
or otherwise, does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United
States Government or any agency thereof, or The Regents of the University of California. Use of the Laboratory or
University’s name for endorsements is prohibited.

The views and opinions of authors expressed herein do not necessarily state or reflect those of the United States
Government or any agency thereof or The Regents of the University of California. Neither Berkeley Lab nor its
employees are agents of the US Government.

Berkeley Lab web pages link to many other websites. Such links do not constitute an endorsement of the content or
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