Update manage_neuroconv.py

NeurodataWithoutBorders · Nov 13, 2024 · f3d6358 · f3d6358
1 parent 454c29f
commit f3d6358
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/src/pyflask/manageNeuroconv/manage_neuroconv.py b/src/pyflask/manageNeuroconv/manage_neuroconv.py
@@ -1731,11 +1731,13 @@ def generate_test_data(output_path: str):
     with open(file=lf_meta_file_path, mode="w") as io:
         io.write(lf_meta_content)
 
-    # Make Phy folder
+    # Make Phy folder - see https://spikeinterface.readthedocs.io/en/latest/modules/exporters.html
     sorting_analyzer = spikeinterface.create_sorting_analyzer(
         sorting=sorting, recording=artificial_ap_band_in_uV, mode="memory", sparse=False
     )
-    sorting_analyzer.compute("templates")
+    sorting_analyzer.compute(['random_spikes', 'waveforms', 'templates', 'noise_levels'])
+    sorting_analyzer.compute('spike_amplitudes')
+    sorting_analyzer.compute('principal_components', n_components = 5, mode="by_channel_local")
 
     spikeinterface.exporters.export_to_phy(
         sorting_analyzer=sorting_analyzer, output_folder=phy_output_folder, remove_if_exists=True, copy_binary=False