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Updates based on Ryan's feedback
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garrettmflynn committed Apr 3, 2024
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2 changes: 1 addition & 1 deletion docs/tutorials/dataset.rst
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Expand Up @@ -17,7 +17,7 @@ Navigate to the **Settings** page using the main sidebar. Then press the **Gener

Press the Generate button on the Settings page to create the dataset.

The generated data will populate in the `~/NWB_GUIDE/test_data` directory and include a `data` folder with the original data as well as a `dataset` folder that duplicates this `data` across multiple subjects and sessions.
The generated data will populate in the ``~/NWB_GUIDE/test_data`` directory and include a `data` folder with the original data as well as a `dataset` folder that duplicates this `data` across multiple subjects and sessions.

.. code-block:: bash
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8 changes: 4 additions & 4 deletions docs/tutorials/single_session.rst
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Expand Up @@ -3,7 +3,7 @@ Converting a Single Session

As a researcher, you’ve just completed an experimental session and you’d like to convert your data to NWB right away.

Upon launching the GUIDE, you'll begin on the Conversions page. If you’re opening the application for the first time, there should be no pipelines listed on this page.
Upon launching the GUIDE, you'll begin on the Convert page. If you’re opening the application for the first time, there should be no pipelines listed on this page.

.. figure:: ../assets/tutorials/home-page.png
:align: center
Expand Down Expand Up @@ -59,7 +59,7 @@ Next, you’ll specify the data formats you’re working with on the Data Format
:align: center
:alt: Date Formats page

The tutorial we're working with uses the SpikeGLX and Phy formats, a common output for NeuroPixel recordings and subsequent spike sorting. To specify that your pipeline will handle these files, you’ll press the “Add Format” button.
The tutorial we're working with uses the SpikeGLX and Phy formats, a common output for Neuropixels recordings and subsequent spike sorting. To specify that your pipeline will handle these files, you’ll press the “Add Format” button.

.. figure:: ../assets/tutorials/single/format-options.png
:align: center
Expand Down Expand Up @@ -92,7 +92,7 @@ Source Data Information
^^^^^^^^^^^^^^^^^^^^^^^
On this page, specify the relevant **.bin** (Spikeglx) file and **phy** folder so that the GUIDE can find this source data to complete the conversion.

As discussed in the :doc:`Dataset Generation </tutorials/dataset>` tutorial, these can be found in the `~/NWB_GUIDE/test-data/data` directory.
As discussed in the :doc:`Dataset Generation </tutorials/dataset>` tutorial, these can be found in the ``~/NWB_GUIDE/test-data/data`` directory.

You can either click the file selector to navigate to the file or drag-and-drop into the GUIDE from your file navigator.

Expand All @@ -112,7 +112,7 @@ The Session Start Time in the General Metadata section is already specified beca
:alt: Metadata page with invalid Subject information


However, we still need to add the Subject information—as noted by the red accents around that item. Let’s say that our subject is a male mouse with an age of P30D.
However, we still need to add the Subject information—as noted by the red accents around that item. Let’s say that our subject is a male mouse with an age of P30D, which represents 30 days old.

.. figure:: ../assets/tutorials/single/metadata-subject-complete.png
:align: center
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2 changes: 1 addition & 1 deletion pyflask/manageNeuroconv/manage_neuroconv.py
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Expand Up @@ -1062,7 +1062,7 @@ def generate_test_data(output_path: str):
spikeglx_output_folder = base_path / "spikeglx"
phy_output_folder = base_path / "phy"

# Define NeuroPixel-like values for sampling rates and conversion factors
# Define Neuropixels-like values for sampling rates and conversion factors
duration_in_s = 3.0
number_of_units = 50
number_of_channels = 385 # Have to include 'sync' channel to be proper SpikeGLX. TODO: artificiate sync pulses
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