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Merge pull request #419 from NeurodataWithoutBorders/user-test-retreat-1
Updates from Retreat User Test 1
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,173 +1,171 @@ | ||
| { | ||
| "$schema": "http://json-schema.org/draft-07/schema#", | ||
| "$id": "base_metafile.schema.json", | ||
| "title": "Base schema for the metafile", | ||
| "description": "Base schema for the metafile", | ||
| "version": "0.1.0", | ||
| "type": "object", | ||
| "required": ["NWBFile"], | ||
| "properties": { | ||
| "NWBFile": { | ||
| "type": "object", | ||
| "additionalProperties": false, | ||
| "required": ["session_start_time"], | ||
| "properties": { | ||
| "keywords": { | ||
| "description": "Terms to search over", | ||
| "type": "array", | ||
| "items": { | ||
| "title": "keyword", | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "experiment_description": { | ||
| "type": "string", | ||
| "description": "general description of the experiment" | ||
| }, | ||
| "session_id": { | ||
| "type": "string", | ||
| "description": "lab-specific ID for the session" | ||
| }, | ||
| "experimenter": { | ||
| "description": "Name of person/people who performed experiment", | ||
| "type": "array", | ||
| "items": { | ||
| "type": "string", | ||
| "title": "experimenter" | ||
| } | ||
| }, | ||
| "identifier": { | ||
| "type": "string", | ||
| "description": "A unique text identifier for the file. If one is not provided it will be randomly assigned" | ||
| }, | ||
| "institution": { | ||
| "type": "string", | ||
| "description": "Institution(s) where experiment is performed" | ||
| }, | ||
| "lab": { | ||
| "type": "string", | ||
| "description": "Lab where experiment was performed" | ||
| }, | ||
| "session_description": { | ||
| "type": "string", | ||
| "description": "A description of the session where this data was generated" | ||
| }, | ||
| "session_start_time": { | ||
| "type": "string", | ||
| "format": "date-time", | ||
| "description": "The start date and time of the recording session" | ||
| }, | ||
| "surgery": { | ||
| "type": "string", | ||
| "description": "Narrative description about surgery/surgeries, including date(s) and who performed surgery." | ||
| }, | ||
| "pharmacology": { | ||
| "type": "string", | ||
| "description": "Description of drugs used, including how and when they were administered. Anesthesia(s), painkiller(s), etc., plus dosage, concentration, etc." | ||
| }, | ||
| "protocol": { | ||
| "type": "string", | ||
| "description": "Experimental protocol, if applicable. E.g., include IACUC protocol" | ||
| }, | ||
| "related_publications": { | ||
| "type": "array", | ||
| "items": { | ||
| "title": "related publication", | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "slices": { | ||
| "type": "string", | ||
| "description": "Description of slices, including information about preparation thickness, orientation, temperature and bath solution." | ||
| }, | ||
| "source_script": { | ||
| "type": "string", | ||
| "description": "Script file used to create this NWB file." | ||
| }, | ||
| "source_script_file_name": { | ||
| "type": "string", | ||
| "description": "Script file used to create this NWB file." | ||
| }, | ||
| "notes": { | ||
| "type": "string", | ||
| "description": "Notes about the experiment." | ||
| }, | ||
| "virus": { | ||
| "type": "string", | ||
| "description": "Narrative description about surgery/surgeries, including date(s) and who performed surgery." | ||
| }, | ||
| "data_collection": { | ||
| "type": "string", | ||
| "description": "Notes about data collection and analysis." | ||
| }, | ||
| "stimulus_notes": { | ||
| "type": "string", | ||
| "description": "Notes about data collection and analysis." | ||
| "$schema": "http://json-schema.org/draft-07/schema#", | ||
| "$id": "base_metafile.schema.json", | ||
| "title": "Base schema for the metafile", | ||
| "description": "Base schema for the metafile", | ||
| "version": "0.1.0", | ||
| "type": "object", | ||
| "required": ["NWBFile"], | ||
| "properties": { | ||
| "NWBFile": { | ||
| "type": "object", | ||
| "additionalProperties": false, | ||
| "required": ["session_start_time"], | ||
| "properties": { | ||
| "keywords": { | ||
| "description": "Terms to search over", | ||
| "type": "array", | ||
| "items": { | ||
| "title": "keyword", | ||
| "type": "string" | ||
| } | ||
| } | ||
| }, | ||
| "Subject": { | ||
| "type": "object", | ||
| "required": [ | ||
| "subject_id", | ||
| "sex", | ||
| "species" | ||
| ], | ||
| "additionalProperties": false, | ||
| "properties": { | ||
| "age": { | ||
| "type": "string", | ||
| "description": "The age of the subject. The ISO 8601 Duration format is recommended, e.g., ‘P90D‘ for 90 days old, ‘P2W‘ for 2 weeks old, ‘P18Y‘ for 18 years old.", | ||
| "pattern": "^P((\\d+Y)?(\\d+M)?(\\d+D)?(T(\\d+H)?(\\d+M)?(\\d+S)?))|(\\d+W)?$" | ||
| }, | ||
| "age__reference": { | ||
| "type": "string", | ||
| "enum": ["birth", "gestational"], | ||
| "description": "Age is with reference to this event. Can be ‘birth’ or ‘gestational’.", | ||
| "default": "birth" | ||
| }, | ||
| "description": { | ||
| "type": "string", | ||
| "default": "no description", | ||
| "description": "Description of subject and where subject came from (e.g., breeder, if animal)." | ||
| }, | ||
| "genotype": { | ||
| "type": "string", | ||
| "description": "Genetic strain. If absent, assume Wild Type (WT)" | ||
| }, | ||
| "sex": { | ||
| "type": "string", | ||
| "enum": [ | ||
| "M", | ||
| "F", | ||
| "U", | ||
| "O" | ||
| ], | ||
| "default": "U" | ||
| }, | ||
| "species": { | ||
| "type": "string", | ||
| "description": "Species of subject. Use latin name.", | ||
| "pattern": "^[A-Z][a-z]+ [a-z]+" | ||
| }, | ||
| "subject_id": { | ||
| "type": "string", | ||
| "description": "ID of animal/person used/participating in experiment (lab convention)" | ||
| }, | ||
| "weight": { | ||
| "type": "string", | ||
| "description": "Weight at time of experiment, at time of surgery and at other important times." | ||
| }, | ||
| "date_of_birth": { | ||
| "type": "string", | ||
| "format": "date-time", | ||
| "description": "Date of birth of subject. Can be supplied instead of 'age'." | ||
| }, | ||
| "strain": { | ||
| "type": "string", | ||
| "description": "The strain of the subject, e.g., ‘C57BL/6J‘" | ||
| }, | ||
| "experiment_description": { | ||
| "type": "string", | ||
| "description": "general description of the experiment" | ||
| }, | ||
| "session_id": { | ||
| "type": "string", | ||
| "description": "lab-specific ID for the session" | ||
| }, | ||
| "experimenter": { | ||
| "description": "Name of person/people who performed experiment", | ||
| "type": "array", | ||
| "items": { | ||
| "type": "string", | ||
| "title": "experimenter" | ||
| } | ||
| }, | ||
| "identifier": { | ||
| "type": "string", | ||
| "description": "A unique text identifier for the file. If one is not provided it will be randomly assigned" | ||
| }, | ||
| "institution": { | ||
| "type": "string", | ||
| "description": "Institution(s) where experiment is performed" | ||
| }, | ||
| "lab": { | ||
| "type": "string", | ||
| "description": "Lab where experiment was performed" | ||
| }, | ||
| "session_description": { | ||
| "type": "string", | ||
| "description": "A description of the session where this data was generated" | ||
| }, | ||
| "session_start_time": { | ||
| "type": "string", | ||
| "format": "date-time", | ||
| "description": "The start date and time of the recording session" | ||
| }, | ||
| "surgery": { | ||
| "type": "string", | ||
| "description": "Narrative description about surgery/surgeries, including date(s) and who performed surgery." | ||
| }, | ||
| "pharmacology": { | ||
| "type": "string", | ||
| "description": "Description of drugs used, including how and when they were administered. Anesthesia(s), painkiller(s), etc., plus dosage, concentration, etc." | ||
| }, | ||
| "protocol": { | ||
| "type": "string", | ||
| "description": "Experimental protocol, if applicable. E.g., include IACUC protocol" | ||
| }, | ||
| "related_publications": { | ||
| "type": "array", | ||
| "items": { | ||
| "title": "related publication", | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "slices": { | ||
| "type": "string", | ||
| "description": "Description of slices, including information about preparation thickness, orientation, temperature and bath solution." | ||
| }, | ||
| "source_script": { | ||
| "type": "string", | ||
| "description": "Script file used to create this NWB file." | ||
| }, | ||
| "source_script_file_name": { | ||
| "type": "string", | ||
| "description": "Script file used to create this NWB file." | ||
| }, | ||
| "notes": { | ||
| "type": "string", | ||
| "description": "Notes about the experiment." | ||
| }, | ||
| "virus": { | ||
| "type": "string", | ||
| "description": "Narrative description about surgery/surgeries, including date(s) and who performed surgery." | ||
| }, | ||
| "data_collection": { | ||
| "type": "string", | ||
| "description": "Notes about data collection and analysis." | ||
| }, | ||
| "stimulus_notes": { | ||
| "type": "string", | ||
| "description": "Notes about data collection and analysis." | ||
| } | ||
| } | ||
| }, | ||
| "Subject": { | ||
| "type": "object", | ||
| "required": [ | ||
| "subject_id", | ||
| "sex", | ||
| "species" | ||
| ], | ||
| "additionalProperties": false, | ||
| "properties": { | ||
| "age": { | ||
| "type": "string", | ||
| "description": "The age of the subject. The ISO 8601 Duration format is recommended, e.g., 'P90D' for 90 days old, 'P2W' for 2 weeks old, 'P18Y' for 18 years old.", | ||
| "pattern": "^P((\\d+Y)?(\\d+M)?(\\d+D)?(T(\\d+H)?(\\d+M)?(\\d+S)?))|(\\d+W)?$" | ||
| }, | ||
| "age__reference": { | ||
| "type": "string", | ||
| "enum": ["birth", "gestational"], | ||
| "description": "Age is with reference to this event. Can be 'birth' or 'gestational'.", | ||
| "default": "birth" | ||
| }, | ||
| "description": { | ||
| "type": "string", | ||
| "description": "Description of subject and where subject came from (e.g., breeder, if animal)." | ||
| }, | ||
| "genotype": { | ||
| "type": "string", | ||
| "description": "Genetic strain. If absent, assume Wild Type (WT)" | ||
| }, | ||
| "sex": { | ||
| "type": "string", | ||
| "enum": [ | ||
| "M", | ||
| "F", | ||
| "U", | ||
| "O" | ||
| ] | ||
| }, | ||
| "species": { | ||
| "type": "string", | ||
| "description": "Species of subject. Use latin name.", | ||
| "pattern": "^[A-Z][a-z]+ [a-z]+" | ||
| }, | ||
| "subject_id": { | ||
| "type": "string", | ||
| "description": "ID of animal/person used/participating in experiment (lab convention)" | ||
| }, | ||
| "weight": { | ||
| "type": "string", | ||
| "description": "Weight at time of experiment, at time of surgery and at other important times." | ||
| }, | ||
| "date_of_birth": { | ||
| "type": "string", | ||
| "format": "date-time", | ||
| "description": "Date of birth of subject. Can be supplied instead of 'age'." | ||
| }, | ||
| "strain": { | ||
| "type": "string", | ||
| "description": "The strain of the subject, e.g., 'C57BL/6J'" | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |
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