[pre-commit.ci] auto fixes from pre-commit.com hooks

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NeurodataWithoutBorders · Mar 7, 2023 · bb50b01 · bb50b01
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Showing 103 changed files with 3,902 additions and 2,331 deletions.
diff --git a/.gitignore b/.gitignore
@@ -6,7 +6,7 @@ node_modules
 build/api
 pysodadist
 pyflaskdist
-pyflask/ds 
+pyflask/ds
 dist
 src/Users
 semantic

diff --git a/.prettierignore b/.prettierignore
@@ -1,2 +1,2 @@
 curate.html
-tools/**/*
+tools/**/*
diff --git a/assets/blackfynn-warning-message.txt b/assets/blackfynn-warning-message.txt
@@ -3,4 +3,3 @@
     "warning-message-1": "<p>As you may know Blackfynn will be transitioning to Pennsieve. During this period, any features of SODA that use Blackfynn could be affected.</p>",
     "warning-message": "<p>This version of SODA is ready to work with Pennsieve. You will be required to connect your Pennsieve account with SODA to get started. <a href='https://github.com/bvhpatel/SODA/wiki/Connect-your-Pennsieve-account-with-SODA' target='_blank'>Click here to learn more.</a> <br>As we are still thoroughly testing our integration with Pennsieve, we do expect some bugs. Please let us know if you find any at <a href='mailto:[email protected]'>[email protected]</a>.</p>"
 }
-
diff --git a/assets/logo-svg/fair-data-innovations-hub-logo.svg b/assets/logo-svg/fair-data-innovations-hub-logo.svg
diff --git a/docs/test-dataset/code/adjusted-code.py b/docs/test-dataset/code/adjusted-code.py
@@ -37,7 +37,7 @@
 from validator_soda import pathToJsonStruct, validate_high_level_folder_structure, validate_high_level_metadata_files, \
 validate_sub_level_organization, validate_submission_file, validate_dataset_description_file
 
-from pysoda import ( 
+from pysoda import (
     # clear_queue,
     agent_running, check_forbidden_characters, check_forbidden_characters_bf, bf_dataset_size
 )

diff --git a/docs/test-dataset/code/some-code.py b/docs/test-dataset/code/some-code.py
@@ -1 +1 @@
-print('Hello! This is an example python file.')
+print('Hello! This is an example python file.')
diff --git a/docs/test-dataset/metadata-files/CHANGES.txt b/docs/test-dataset/metadata-files/CHANGES.txt
@@ -6,4 +6,4 @@ Changes in submssion in August, 2020
 3. Materials and Methods are stated in one Word document loaded in 'protocol" folder
 4. New original confocal microscopic images added in the "primary" folder
 5. New digital traces added in "derivatives" folder
-6. Every microscopic and digital tracing image is accompanied by a png file with the same name for preview
+6. Every microscopic and digital tracing image is accompanied by a png file with the same name for preview
diff --git a/docs/test-dataset/metadata-files/README.txt b/docs/test-dataset/metadata-files/README.txt
@@ -1,5 +1,5 @@
 The dataset contains morphological data only.
-Two kinds of images: confocal microscopic and 3D digital neuronal tracing 
+Two kinds of images: confocal microscopic and 3D digital neuronal tracing
 The forms with information about mice, samples and microscopy are in the "source" folder
 Origianl microscopic images without any modification or anotation are in the "primary".
-The digital traces are in "derivatives".
+The digital traces are in "derivatives".
diff --git a/docs/test-dataset/source/experiment images/HRW tile 25002-84590.ome.tif b/docs/test-dataset/source/experiment images/HRW tile 25002-84590.ome.tif
@@ -1 +1 @@
-text
+text
diff --git a/entitlements.mac.inherit.plist b/entitlements.mac.inherit.plist
@@ -11,4 +11,4 @@
     <key>com.apple.security.cs.disable-library-validation</key>
     <true/>
   </dict>
-</plist>
+</plist>
diff --git a/index.html b/index.html
@@ -222,7 +222,7 @@
             ></ul>
           </div>
         </div>
-        
+
         <!-- Sidebar Footer -->
         <div class="boxhead">
           <div style="display: block" id="catalystneuro-logo">
@@ -232,7 +232,7 @@
                 text-align: center;
               "
             >
-              <a 
+              <a
                 href="https://catalystneuro.com/"
                 style="border-bottom:0px;text-decoration:none;"
               >
@@ -304,4 +304,4 @@ <h1 class="guided--text-sub-step mb-0 mt-0">Guided Mode</h1>
 
     <script src="./assets/lotties.js" type="text/javascript"></script>
   </body>
-</html>
+</html>
Original file line number	Diff line number	Diff line change
Expand Up		@@ -3,4 +3,3 @@
		"warning-message-1": "<p>As you may know Blackfynn will be transitioning to Pennsieve. During this period, any features of SODA that use Blackfynn could be affected.</p>",
		"warning-message": "<p>This version of SODA is ready to work with Pennsieve. You will be required to connect your Pennsieve account with SODA to get started. <a href='https://github.com/bvhpatel/SODA/wiki/Connect-your-Pennsieve-account-with-SODA' target='_blank'>Click here to learn more.</a> <br>As we are still thoroughly testing our integration with Pennsieve, we do expect some bugs. Please let us know if you find any at <a href='mailto:[email protected]'>[email protected]</a>.</p>"
		}
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		print('Hello! This is an example python file.')
		print('Hello! This is an example python file.')