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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,85 @@ | ||
| from pathlib import Path | ||
| import json | ||
| from neuroconv import datainterfaces, NWBConverter | ||
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| filepath = Path("guideGlobalMetadata.json") | ||
| generatedJSONSchemaPath = Path("schemas", "json", "generated") | ||
| generatedJSONSchemaPath.mkdir(exist_ok=True, parents=True) | ||
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| f = filepath.open() | ||
| data = json.load(f) | ||
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| # Create JSON for the Schema | ||
| paths = {} | ||
| for interface in data["supported_interfaces"]: | ||
| interface_class_dict = {interface: interface} | ||
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| class CustomNWBConverter(NWBConverter): | ||
| data_interface_classes = { | ||
| custom_name: getattr(datainterfaces, interface_name) | ||
| for custom_name, interface_name in interface_class_dict.items() | ||
| } | ||
|
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| schema = CustomNWBConverter.get_source_schema() | ||
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| json_object = json.dumps(schema, indent=4) | ||
| paths[interface] = filepath = generatedJSONSchemaPath / f"{interface}.json" | ||
| with open(filepath, "w") as outfile: | ||
| outfile.write(json.dumps(schema, indent=4)) | ||
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| sourceDataStoryPath = Path("src/renderer/src/stories/pages/guided-mode/SourceData.stories.js") | ||
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| importCode = "\n".join(map(lambda arr: f"import {arr[0]}Schema from '../../../../../../{arr[1]}'", paths.items())) | ||
| storyCode = "\n".join( | ||
| map( | ||
| lambda arr: f"""export const {arr[0]} = PageTemplate.bind({{}}); | ||
| const {arr[0]}GlobalCopy = JSON.parse(JSON.stringify(globalState)) | ||
| {arr[0]}GlobalCopy.interfaces.interface = {arr[0]} | ||
| {arr[0]}GlobalCopy.schema.source_data = {arr[0]}Schema | ||
| {arr[0]}.args = {{ activePage, globalState: {arr[0]}GlobalCopy }}; | ||
| """, | ||
| paths.items(), | ||
| ) | ||
| ) | ||
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| allInterfaceCode = "\n".join( | ||
| map( | ||
| lambda arr: f"globalStateCopy.schema.source_data.properties.{arr[0]} = {arr[0]}Schema.properties.{arr[0]}", | ||
| paths.items(), | ||
| ) | ||
| ) | ||
|
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| setDummyPathCode = f""" | ||
| const results = globalStateCopy.results | ||
| for (let sub in results){{ | ||
| for (let ses in results[sub]) results[sub][ses].source_data = {{{list(paths.keys())[1]}: {{file_path: '/dummy/file/path'}}}} | ||
| }} | ||
| """ | ||
|
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| with open(sourceDataStoryPath, "w") as outfile: | ||
| outfile.write( | ||
| f"""import {{ globalState, PageTemplate }} from "./storyStates"; | ||
| {importCode} | ||
| export default {{ | ||
| title: "Pages/Guided Mode/Source Data", | ||
| parameters: {{ | ||
| chromatic: {{ disableSnapshot: false }}, | ||
| }} | ||
| }}; | ||
| const activePage = "conversion/sourcedata" | ||
| const globalStateCopy = JSON.parse(JSON.stringify(globalState)) | ||
| {allInterfaceCode} | ||
| {setDummyPathCode} | ||
| export const All = PageTemplate.bind({{}}); | ||
| All.args = {{ activePage, globalState: globalStateCopy }}; | ||
| {storyCode} | ||
| """ | ||
| ) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| import requests | ||
|
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|
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| def get(path, client): | ||
| if isinstance(client, str): | ||
| r = requests.get(f"{client}/{path}", allow_redirects=True) | ||
| r.raise_for_status() | ||
| return r.json() | ||
| else: | ||
| return client.get(f"/{path}", follow_redirects=True).json | ||
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|
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| def post(path, json, client): | ||
| if isinstance(client, str): | ||
| r = requests.post(f"{client}/{path}", json=json, allow_redirects=True) | ||
| r.raise_for_status() | ||
| return r.json() | ||
| else: | ||
| return client.post(path, json=json, follow_redirects=True).json | ||
|
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|
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| def get_converter_output_schema(interfaces: dict): | ||
| return { | ||
| "type": "object", | ||
| "properties": { | ||
| "title": {"type": "string"}, | ||
| "description": {"type": "string"}, | ||
| "version": {"type": "string"}, | ||
| "properties": { | ||
| "type": "object", | ||
| "properties": { | ||
| interface: { | ||
| "type": "object", | ||
| "properties": { | ||
| "properties": {"type": "object"}, | ||
| "required": {"type": "array"}, | ||
| }, | ||
| } | ||
| for interface in interfaces.keys() | ||
| }, | ||
| "additionalProperties": False, | ||
| }, | ||
| }, | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,33 @@ | ||
| { | ||
| "required": [], | ||
| "properties": { | ||
| "BiocamRecordingInterface": { | ||
| "required": [ | ||
| "file_path" | ||
| ], | ||
| "properties": { | ||
| "file_path": { | ||
| "format": "file", | ||
| "type": "string" | ||
| }, | ||
| "verbose": { | ||
| "type": "boolean", | ||
| "default": true | ||
| }, | ||
| "es_key": { | ||
| "type": "string", | ||
| "default": "ElectricalSeries" | ||
| } | ||
| }, | ||
| "type": "object", | ||
| "additionalProperties": false | ||
| } | ||
| }, | ||
| "type": "object", | ||
| "additionalProperties": false, | ||
| "$schema": "http://json-schema.org/draft-07/schema#", | ||
| "$id": "source.schema.json", | ||
| "title": "Source data schema", | ||
| "description": "Schema for the source data, files and directories", | ||
| "version": "0.1.0" | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,38 @@ | ||
| { | ||
| "required": [], | ||
| "properties": { | ||
| "BlackrockRecordingInterface": { | ||
| "required": [ | ||
| "file_path" | ||
| ], | ||
| "properties": { | ||
| "file_path": { | ||
| "format": "file", | ||
| "type": "string", | ||
| "description": "Path to Blackrock file." | ||
| }, | ||
| "nsx_override": { | ||
| "format": "file", | ||
| "type": "string" | ||
| }, | ||
| "verbose": { | ||
| "type": "boolean", | ||
| "default": true | ||
| }, | ||
| "es_key": { | ||
| "type": "string", | ||
| "default": "ElectricalSeries" | ||
| } | ||
| }, | ||
| "type": "object", | ||
| "additionalProperties": false | ||
| } | ||
| }, | ||
| "type": "object", | ||
| "additionalProperties": false, | ||
| "$schema": "http://json-schema.org/draft-07/schema#", | ||
| "$id": "source.schema.json", | ||
| "title": "Source data schema", | ||
| "description": "Schema for the source data, files and directories", | ||
| "version": "0.1.0" | ||
| } |
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