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Merge pull request #795 from NeurodataWithoutBorders/download-gin-dat…
…a-for-tests Download GIN Data for Pipeline Tests
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| Original file line number | Diff line number | Diff line change |
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| name: Daily Tests | ||
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| on: | ||
| workflow_dispatch: | ||
| schedule: | ||
| - cron: "0 14 * * *" # Daily at 10am EST | ||
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| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.ref }} | ||
| cancel-in-progress: true | ||
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| jobs: | ||
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| DevTests: | ||
| uses: ./.github/workflows/testing_dev.yml | ||
| secrets: | ||
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | ||
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| LiveServices: | ||
| uses: ./.github/workflows/testing_dev_with_live_services.yml | ||
| secrets: | ||
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | ||
| DANDI_STAGING_API_KEY: ${{ secrets.DANDI_STAGING_API_KEY }} | ||
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| BuildTests: | ||
| uses: ./.github/workflows/testing_flask_build_and_dist.yml | ||
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| ExampleDataCache: | ||
| uses: ./.github/workflows/example_data_cache.yml | ||
| secrets: | ||
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | ||
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | ||
| S3_GIN_BUCKET: ${{ secrets.S3_GIN_BUCKET }} | ||
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| ExampleDataTests: | ||
| needs: ExampleDataCache | ||
| uses: ./.github/workflows/testing_pipelines.yml |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,35 @@ | ||
| name: Deploy | ||
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| on: | ||
| pull_request: | ||
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| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.ref }} | ||
| cancel-in-progress: true | ||
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| jobs: | ||
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| DevTests: | ||
| uses: ./.github/workflows/testing_dev.yml | ||
| secrets: | ||
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | ||
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||
| LiveServices: | ||
| uses: ./.github/workflows/testing_dev_with_live_services.yml | ||
| secrets: | ||
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | ||
| DANDI_STAGING_API_KEY: ${{ secrets.DANDI_STAGING_API_KEY }} | ||
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| BuildTests: | ||
| uses: ./.github/workflows/testing_flask_build_and_dist.yml | ||
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| ExampleDataCache: | ||
| uses: ./.github/workflows/example_data_cache.yml | ||
| secrets: | ||
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | ||
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | ||
| S3_GIN_BUCKET: ${{ secrets.S3_GIN_BUCKET }} | ||
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| ExampleDataTests: | ||
| needs: ExampleDataCache | ||
| uses: ./.github/workflows/testing_pipelines.yml |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,74 @@ | ||
| name: Example data cache | ||
| on: | ||
| workflow_call: | ||
| secrets: | ||
| AWS_ACCESS_KEY_ID: | ||
| required: true | ||
| AWS_SECRET_ACCESS_KEY: | ||
| required: true | ||
| S3_GIN_BUCKET: | ||
| required: true | ||
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| jobs: | ||
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| run: | ||
| # Will read on PR dashboard as 'Deploy / ExampleDataCache / {os}' | ||
| # Action dashboard identified by 'Deploy' | ||
| # Requirement settings identified as 'ExampleDataCache / {os}' | ||
| name: ${{ matrix.os }} | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| python-version: ["3.12"] | ||
| os: [ubuntu-latest, macos-latest, macos-13] #, windows-latest] | ||
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| steps: | ||
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| - name: Get ephy_testing_data current head hash | ||
| id: ephys | ||
| run: echo "::set-output name=HASH_EPHY_DATASET::$(git ls-remote https://gin.g-node.org/NeuralEnsemble/ephy_testing_data.git HEAD | cut -f1)" | ||
| - name: Get cached ephys example data - ${{ steps.ephys.outputs.HASH_EPHY_DATASET }} | ||
| uses: actions/cache@v4 | ||
| id: cache-ephys-datasets | ||
| with: | ||
| path: ./ephy_testing_data | ||
| key: ephys-datasets-${{ matrix.os }}-${{ steps.ephys.outputs.HASH_EPHY_DATASET }} | ||
| - name: Get ophys_testing_data current head hash | ||
| id: ophys | ||
| run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)" | ||
| - name: Get cached ophys example data - ${{ steps.ophys.outputs.HASH_OPHYS_DATASET }} | ||
| uses: actions/cache@v4 | ||
| id: cache-ophys-datasets | ||
| with: | ||
| path: ./ophys_testing_data | ||
| key: ophys-datasets-${{ matrix.os }}-${{ steps.ophys.outputs.HASH_OPHYS_DATASET }} | ||
| - name: Get behavior_testing_data current head hash | ||
| id: behavior | ||
| run: echo "::set-output name=HASH_BEHAVIOR_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/behavior_testing_data.git HEAD | cut -f1)" | ||
| - name: Get cached behavior example data - ${{ steps.behavior.outputs.HASH_BEHAVIOR_DATASET }} | ||
| uses: actions/cache@v4 | ||
| id: cache-behavior-datasets | ||
| with: | ||
| path: ./behavior_testing_data | ||
| key: behavior-datasets-${{ matrix.os }}-${{ steps.behavior.outputs.HASH_behavior_DATASET }} | ||
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| - if: steps.cache-ephys-datasets.outputs.cache-hit != 'true' || steps.cache-ophys-datasets.outputs.cache-hit != 'true' || steps.cache-behavior-datasets.outputs.cache-hit != 'true' | ||
| name: Install and configure AWS CLI | ||
| run: | | ||
| pip install awscli | ||
| aws configure set aws_access_key_id ${{ secrets.AWS_ACCESS_KEY_ID }} | ||
| aws configure set aws_secret_access_key ${{ secrets.AWS_SECRET_ACCESS_KEY }} | ||
| - if: steps.cache-ephys-datasets.outputs.cache-hit != 'true' | ||
| name: Download ephys dataset from S3 | ||
| run: | | ||
| aws s3 cp --region=us-east-2 ${{ secrets.S3_GIN_BUCKET }}/ephy_testing_data ./ephy_testing_data --recursive | ||
| - if: steps.cache-ophys-datasets.outputs.cache-hit != 'true' | ||
| name: Download ophys dataset from S3 | ||
| run: | | ||
| aws s3 cp --region=us-east-2 ${{ secrets.S3_GIN_BUCKET }}/ophys_testing_data ./ophys_testing_data --recursive | ||
| - if: steps.cache-behavior-datasets.outputs.cache-hit != 'true' | ||
| name: Download behavior dataset from S3 | ||
| run: | | ||
| aws s3 cp --region=us-east-2 ${{ secrets.S3_GIN_BUCKET }}/behavior_testing_data ./behavior_testing_data --recursive |
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