Avoid setting units if not exists. Use global base directory in results

NeurodataWithoutBorders · Apr 10, 2024 · 3c2e48c · 3c2e48c
1 parent a3a6bf7
commit 3c2e48c
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Showing 2 changed files with 22 additions and 10 deletions.
diff --git a/schemas/base-metadata.schema.ts b/schemas/base-metadata.schema.ts
@@ -156,16 +156,21 @@ export const preprocessMetadataSchema = (schema: any = baseMetadataSchema, globa
             order: ["channel_name", "group_name", "shank_electrode_number", ...UV_PROPERTIES]
         })
 
-        ecephys.properties["Units"].title = "Summarized Units"
-
-        updateEcephysTable("Units", copy, {
-            properties: {
-                clu_id: {
-                    title: 'Cluster ID',
-                }
-            },
-            order: ["unit_id", "unit_name", "clu_id", "group_id"]
-        })
+        if (ecephys.properties["Units"]) {
+
+            ecephys.properties["Units"].title = "Summarized Units"
+
+
+            updateEcephysTable("Units", copy, {
+                properties: {
+                    clu_id: {
+                        title: 'Cluster ID',
+                    }
+                },
+                order: ["unit_id", "unit_name", "clu_id", "group_id"]
+            })
+
+        }
 
     }
 

diff --git a/src/renderer/src/stories/pages/guided-mode/data/GuidedPathExpansion.js b/src/renderer/src/stories/pages/guided-mode/data/GuidedPathExpansion.js
@@ -329,6 +329,9 @@ export class GuidedPathExpansionPage extends Page {
 
         await this.form.validate();
 
+        const globalBaseDirectory = this.workflow.base_directory.value;
+
+
         const finalStructure = {};
         for (let key in structure) {
             const entry = { ...structure[key] };
@@ -337,9 +340,13 @@ export class GuidedPathExpansionPage extends Page {
             if (fstring.split(".").length > 1) entry.file_path = fstring;
             else entry.folder_path = fstring;
             delete entry.format_string_path;
+
+            if (!entry.base_directory && globalBaseDirectory) entry.base_directory = globalBaseDirectory
+
             finalStructure[key] = entry;
         }
 
+
         if (Object.keys(finalStructure).length === 0) {
             const message =
                 "Please configure at least one interface. <br/><small>Otherwise, revisit <b>Pipeline Workflow</b> to update your configuration.</small>";