[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

.github/workflows/daily_tests.yml

@@ -49,7 +49,7 @@ jobs:
           echo "ExampleDataCache: ${{ needs.ExampleDataCache.result }}"
           echo "ExampleDataTests: ${{ needs.ExampleDataTests.result }}"
       - name: debugging
-        run: export test=(${{ needs.DevTests.result }} == 'failure' || ${{ needs.LiveServices.result }} == 'failure' || ${{ needs.BuildTests.result }} == 'failure' || ${{ needs.ExampleDataCache.result }} == 'failure' || ${{ needs.ExampleDataTests.result }} == 'failure') 
+        run: export test=(${{ needs.DevTests.result }} == 'failure' || ${{ needs.LiveServices.result }} == 'failure' || ${{ needs.BuildTests.result }} == 'failure' || ${{ needs.ExampleDataCache.result }} == 'failure' || ${{ needs.ExampleDataTests.result }} == 'failure')
       - name: debugging print
         run: echo $test
       #- name: Printout logic trigger

src/electron/frontend/core/components/FileSystemSelector.js

@@ -280,9 +280,11 @@ export class FilesystemSelector extends LitElement {
                                         >`
                                   : ""}`}
 
-                              <div class="controls">
-                                  ${this.value ? html`<div @click=${() => this.#handleFiles()}>${unsafeSVG(restartSVG)}</div>` : ""}
-                              </div>
+                    <div class="controls">
+                        ${this.value
+                            ? html`<div @click=${() => this.#handleFiles()}>${unsafeSVG(restartSVG)}</div>`
+                            : ""}
+                    </div>
                 </button>
                 ${this.multiple && isArray && this.value.length > 1
                     ? new List({
@@ -293,7 +295,6 @@ export class FilesystemSelector extends LitElement {
                           },
                       })
                     : ""}
-
             </div>
             ${isMultipleTypes
                 ? html`<div id="button-div">

src/electron/frontend/core/components/InspectorList.js

@@ -4,13 +4,12 @@ import { getMessageType, isErrorImportance } from "../validation";
 
 import { unsafeHTML } from "lit/directives/unsafe-html.js";
 
-import { header } from '../../utils/text'
+import { header } from "../../utils/text";
 
 const sortAlphabeticallyWithNumberedStrings = (a, b) => {
     if (a === b) return 0;
-    return a.localeCompare(b, undefined, { numeric: true, sensitivity: 'base' });
-}
-
+    return a.localeCompare(b, undefined, { numeric: true, sensitivity: "base" });
+};
 
 const sortList = (items) => {
     return items
@@ -23,19 +22,19 @@ const sortList = (items) => {
             else if (lowA) return 1;
             else return -1;
         })
-        
+
         .sort((a, b) => {
             const aCritical = isErrorImportance.includes(a.importance);
             const bCritical = isErrorImportance.includes(b.importance);
             if (aCritical && bCritical) return 0;
             else if (aCritical) return -1;
             else return 1;
-        })
+        });
 };
 
 const aggregateMessages = (items) => {
     let messages = {};
-    console.log(items)
+    console.log(items);
     items.forEach((item) => {
         const copy = { ...item };
         delete copy.file_path;

src/electron/frontend/core/components/NWBFilePreview.js

@@ -159,11 +159,7 @@ export class NWBFilePreview extends LitElement {
                                             { path: fileArr[0].info.file, ...options },
                                             { title }
                                         ) // Inspect the first file
-                                      : await run(
-                                            "neuroconv/inspect",
-                                            { path, ...options },
-                                            { title: title + "s" }
-                                        ); // Inspect the folder
+                                      : await run("neuroconv/inspect", { path, ...options }, { title: title + "s" }); // Inspect the folder
 
                                   const result = onlyFirstFile
                                       ? {

src/electron/frontend/core/components/pages/guided-mode/options/GuidedInspectorPage.js

@@ -134,29 +134,27 @@ export class GuidedInspectorPage extends Page {
         return html`
             ${until(
                 (async () => {
-
                     this.report = inspector;
 
                     const oneFile = fileArr.length <= 1;
 
-                    const willRun = !this.report
+                    const willRun = !this.report;
                     const swalOpts = willRun ? await createProgressPopup({ title: oneFile ? title : `${title}s` }) : {};
 
                     const { close: closeProgressPopup } = swalOpts;
 
                     if (oneFile) {
-
                         if (!this.report) {
                             const result = await run(
                                 "neuroconv/inspect",
                                 { path: fileArr[0].info.file, ...options, request_id: swalOpts.id },
                                 swalOpts
-                            ).catch((error) => {
-                                this.notify(error.message, "error");
-                                return null;
-                            })
-                            .finally(() => closeProgressPopup());
-
+                            )
+                                .catch((error) => {
+                                    this.notify(error.message, "error");
+                                    return null;
+                                })
+                                .finally(() => closeProgressPopup());
 
                             if (!result) return "Failed to generate inspector report.";
 
@@ -182,7 +180,6 @@ export class GuidedInspectorPage extends Page {
                     const path = getSharedPath(fileArr.map(({ info }) => info.file));
 
                     if (!this.report) {
-
                         const result = await run(
                             "neuroconv/inspect_folder",
                             { path, ...options, request_id: swalOpts.id },

src/electron/frontend/core/components/pages/inspect/InspectPage.js

@@ -39,7 +39,7 @@ export class InspectPage extends Page {
             }
         );
 
-        console.log(result)
+        console.log(result);
 
         closeProgressPopup();
 

src/electron/frontend/utils/popups.ts

@@ -40,7 +40,7 @@ export const createProgressPopup = async (
         options.showCancelButton = true;
         options.customClass = { actions: "swal-conversion-actions" };
     }
-    
+
     await openProgressSwal(options, (result) => {
         if (!result.isConfirmed) cancelController.abort();
     });

src/pyflask/manageNeuroconv/manage_neuroconv.py

@@ -1438,10 +1438,9 @@ def _inspect_all(url, config):
     from nwbinspector.utils import calculate_number_of_cpu
     from tqdm_publisher import TQDMProgressSubscriber
 
-
     path = config.pop("path", None)
 
-    paths = [ path ] if path else config.pop("paths", [])
+    paths = [path] if path else config.pop("paths", [])
 
     nwbfile_paths = []
     for path in paths:
@@ -1450,7 +1449,7 @@ def _inspect_all(url, config):
             nwbfile_paths.append(posix_path)
         else:
             nwbfile_paths.extend(list(posix_path.rglob("*.nwb")))
-    
+
     request_id = config.pop("request_id", None)
 
     n_jobs = config.get("n_jobs", -2)  # Default to all but one CPU
@@ -1542,6 +1541,7 @@ def _aggregate_symlinks_in_new_directory(paths, reason="", folder_path=None) ->
 
     return folder_path
 
+
 def _format_spikeglx_meta_file(bin_file_path: str) -> str:
     bin_file_path = Path(bin_file_path)
 

src/pyflask/namespaces/neuroconv.py

@@ -161,6 +161,7 @@ def post(self):
         else:
             return upload_multiple_filesystem_objects_to_dandi(**neuroconv_namespace.payload)
 
+
 @neuroconv_namespace.route("/announce/progress")
 class InspectNWBFolder(Resource):
     @neuroconv_namespace.doc(responses={200: "Success", 400: "Bad Request", 500: "Internal server error"})