Use latest neuroconv 0.6.5

NeurodataWithoutBorders · Nov 13, 2024 · 0ea23b9 · 0ea23b9
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commit 0ea23b9
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Showing 4 changed files with 4 additions and 12 deletions.
diff --git a/environments/environment-Linux.yml b/environments/environment-Linux.yml
@@ -16,8 +16,7 @@ dependencies:
       - flask-cors == 4.0.0
       - flask_restx == 1.1.0
       - werkzeug < 3.0  # werkzeug 3.0 deprecates features used by flask 2.3.2. Remove this when updating flask.
-      # For stability, NeuroConv is pinned at a commit just prior to Pydantic schema inference refactor
-      - neuroconv @ git+https://github.com/catalystneuro/neuroconv.git@8fa1c8f46316a7192073713e3e4e78c25a2e0d36#neuroconv[dandi,compressors,ecephys,ophys,behavior,text]
+      - neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.6.5
       - scikit-learn == 1.4.0  # Tutorial data generation
       - tqdm_publisher >= 0.0.1  # Progress bars
       - tzlocal >= 5.2  # Frontend timezone handling
diff --git a/environments/environment-MAC-apple-silicon.yml b/environments/environment-MAC-apple-silicon.yml
@@ -22,10 +22,6 @@ dependencies:
       - flask-cors == 4.0.0
       - flask_restx == 1.1.0
       - werkzeug < 3.0  # werkzeug 3.0 deprecates features used by flask 2.3.2. Remove this when updating flask.
-      # NOTE: the NeuroConv wheel on PyPI includes sonpy which is not compatible with arm64, so build and install
-      # NeuroConv from GitHub, which will remove the sonpy dependency when building from Mac arm64
-      # For stability, NeuroConv is pinned at a commit just prior to Pydantic schema inference refactor
-      - neuroconv @ git+https://github.com/catalystneuro/neuroconv.git@8fa1c8f46316a7192073713e3e4e78c25a2e0d36#neuroconv[dandi,compressors,ecephys,ophys,behavior,text]
-      - scikit-learn == 1.4.0  # Tutorial data generation
+      - neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.6.5      - scikit-learn == 1.4.0  # Tutorial data generation
       - tqdm_publisher >= 0.0.1  # Progress bars
       - tzlocal >= 5.2  # Frontend timezone handling
diff --git a/environments/environment-MAC-intel.yml b/environments/environment-MAC-intel.yml
@@ -19,8 +19,6 @@ dependencies:
       - flask-cors == 4.0.0
       - flask_restx == 1.1.0
       - werkzeug < 3.0  # werkzeug 3.0 deprecates features used by flask 2.3.2. Remove this when updating flask.
-      # For stability, NeuroConv is pinned at a commit just prior to Pydantic schema inference refactor
-      - neuroconv @ git+https://github.com/catalystneuro/neuroconv.git@8fa1c8f46316a7192073713e3e4e78c25a2e0d36#neuroconv[dandi,compressors,ecephys,ophys,behavior,text]
-      - scikit-learn == 1.4.0  # Tutorial data generation
+      - neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.6.5      - scikit-learn == 1.4.0  # Tutorial data generation
       - tqdm_publisher >= 0.0.1  # Progress bars
       - tzlocal >= 5.2  # Frontend timezone handling
diff --git a/environments/environment-Windows.yml b/environments/environment-Windows.yml
@@ -19,8 +19,7 @@ dependencies:
       - flask-cors === 3.0.10
       - flask_restx == 1.1.0
       - werkzeug < 3.0  # werkzeug 3.0 deprecates features used by flask 2.3.2. Remove this when updating flask.
-      # For stability, NeuroConv is pinned at a commit just prior to Pydantic schema inference refactor
-      - neuroconv @ git+https://github.com/catalystneuro/neuroconv.git@8fa1c8f46316a7192073713e3e4e78c25a2e0d36#neuroconv[dandi,compressors,ecephys,ophys,behavior,text]
+      - neuroconv[dandi,compressors,ecephys,ophys,behavior,text] == 0.6.5
       - scikit-learn == 1.4.0  # Tutorial data generation
       - tqdm_publisher >= 0.0.1  # Progress bars
       - tzlocal >= 5.2  # Frontend timezone handling