Add MicroManagerTiffImagingInterface #568
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: PyFlask build and distributable tests | |
| on: | |
| schedule: | |
| - cron: "0 16 * * *" # Daily at noon EST | |
| pull_request: | |
| workflow_dispatch: | |
| # Cancel previous workflows on the same pull request | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| CACHE_NUMBER: 1 # increase to reset cache manually | |
| jobs: | |
| testing: | |
| name: PyFlask build and distributable tests on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| include: | |
| - python-version: "3.9" | |
| os: ubuntu-latest | |
| label: environments/environment-Linux.yml | |
| prefix: /usr/share/miniconda3/envs/nwb-guide | |
| - python-version: "3.9" | |
| os: macos-latest | |
| label: environments/environment-Mac.yml | |
| prefix: /Users/runner/miniconda3/envs/nwb-guide | |
| - python-version: "3.9" | |
| os: windows-latest | |
| label: environments/environment-Windows.yml | |
| prefix: C:\Miniconda3\envs\nwb-guide | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - run: git fetch --prune --unshallow --tags | |
| # see https://github.com/conda-incubator/setup-miniconda#caching-environments | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: nwb-guide | |
| use-mamba: true | |
| - name: Set cache date | |
| id: get-date | |
| run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: Cache Mamba env | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: | |
| conda-${{ runner.os }}-${{ runner.arch }}-${{steps.get-date.outputs.today }}-${{ hashFiles(matrix.label) }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| CACHE_NUMBER: ${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - if: steps.cache.outputs.cache-hit != 'true' | |
| name: Update environment | |
| run: mamba env update -f ${{ matrix.label }} | |
| - name: Setup Node | |
| uses: actions/setup-node@v3 | |
| with: | |
| node-version: "18" | |
| - run: npm ci | |
| # fix for macos build | |
| - if: matrix.os == 'macos-latest' | |
| run: rm -f /Users/runner/miniconda3/envs/nwb-guide/lib/python3.9/site-packages/sonpy/linux/sonpy.so | |
| - name: Build PyFlask distribution | |
| run: npm run build:flask | |
| - name: Run test on distributed executable | |
| run: node tests/testPyinstallerExecutable.js | |
| - name: Run Python tests on distributed executable | |
| run: npm run test:executable |