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Add support for NWB schemas v2.8.0 #145

Add support for NWB schemas v2.8.0

Add support for NWB schemas v2.8.0 #145

GitHub Actions / JUnit Test Report failed Nov 27, 2024 in 0s

221 tests run, 217 passed, 0 skipped, 4 failed.

Annotations

Check failure on line 1 in PynwbTutorialTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

PynwbTutorialTest.testTutorial(tutorialFile=docs_gallery_domain_ecephys.py)

Error occurred in tests.unit.PynwbTutorialTest/testTutorial(tutorialFile=docs_gallery_domain_ecephys.py) and it did not run to completion.
    ---------
Raw output
Error occurred in tests.unit.PynwbTutorialTest/testTutorial(tutorialFile=docs_gallery_domain_ecephys.py) and it did not run to completion.
    ---------
    Error ID:
    ---------
    ''
    --------------
    Error Details:
    --------------
    Error using tests.unit.PynwbTutorialTest/testTutorial (line 114)
    Failed to run python tutorial named "ecephys" with error:
     Traceback (most recent call last):
      File
      "/tmp/tp590c7940_6621_4bf9_9dbe_be5942853707/pynwb-dev/docs/gallery/domain/ecephys.py",
      line 85, in <module>
        device = nwbfile.create_device(
      File
      "/tmp/tp590c7940_6621_4bf9_9dbe_be5942853707/pynwb-dev/temp_venv/lib/python3.10/site-packages/hdmf/utils.py",
      line 667, in func_call
        pargs = _check_args(args, kwargs)
      File
      "/tmp/tp590c7940_6621_4bf9_9dbe_be5942853707/pynwb-dev/temp_venv/lib/python3.10/site-packages/hdmf/utils.py",
      line 660, in _check_args
        raise ExceptionType(msg)
    TypeError: MultiContainerInterface.__make_create.<locals>._func: Expected at
    most 3 arguments ['name', 'description', 'manufacturer'], got 6: 0 positional
    and 6 keyword ['description', 'manufacturer', 'model_name', 'model_number',
    'name', 'serial_number']

Check failure on line 1 in PynwbTutorialTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

PynwbTutorialTest.testTutorial(tutorialFile=docs_gallery_domain_ophys.py)

Error occurred in tests.unit.PynwbTutorialTest/testTutorial(tutorialFile=docs_gallery_domain_ophys.py) and it did not run to completion.
    ---------
Raw output
Error occurred in tests.unit.PynwbTutorialTest/testTutorial(tutorialFile=docs_gallery_domain_ophys.py) and it did not run to completion.
    ---------
    Error ID:
    ---------
    ''
    --------------
    Error Details:
    --------------
    Error using tests.unit.PynwbTutorialTest/testTutorial (line 114)
    Failed to run python tutorial named "ophys" with error:
     Traceback (most recent call last):
      File
      "/tmp/tp590c7940_6621_4bf9_9dbe_be5942853707/pynwb-dev/docs/gallery/domain/ophys.py",
      line 93, in <module>
        device = nwbfile.create_device(
      File
      "/tmp/tp590c7940_6621_4bf9_9dbe_be5942853707/pynwb-dev/temp_venv/lib/python3.10/site-packages/hdmf/utils.py",
      line 667, in func_call
        pargs = _check_args(args, kwargs)
      File
      "/tmp/tp590c7940_6621_4bf9_9dbe_be5942853707/pynwb-dev/temp_venv/lib/python3.10/site-packages/hdmf/utils.py",
      line 660, in _check_args
        raise ExceptionType(msg)
    TypeError: MultiContainerInterface.__make_create.<locals>._func: Expected at
    most 3 arguments ['name', 'description', 'manufacturer'], got 6: 0 positional
    and 6 keyword ['description', 'manufacturer', 'model_name', 'model_number',
    'name', 'serial_number']

Check failure on line 1 in TutorialTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

TutorialTest.testTutorial(tutorialFile=ecephys.mlx)

Verification failed in tests.unit.TutorialTest/testTutorial(tutorialFile=ecephys.mlx).
    ----------------
Raw output
Verification failed in tests.unit.TutorialTest/testTutorial(tutorialFile=ecephys.mlx).
    ----------------
    Test Diagnostic:
    ----------------
    Message: Message: missing data type VectorData (band_name)
    Location: processing/ecephys/theta/bands
     File: ecephys_tutorial.nwb
    
    ---------------------
    Framework Diagnostic:
    ---------------------
    verifyLessThan failed.
    --> The value must be less than the maximum value.
    
    Actual Value:
         3
    Maximum Value (Exclusive):
         1
    ------------------
    Stack Information:
    ------------------
    In /home/runner/work/matnwb/matnwb/+tests/+unit/TutorialTest.m (TutorialTest.inspectTutorialFileWithNwbInspector) at 136
    In /home/runner/work/matnwb/matnwb/+tests/+unit/TutorialTest.m (TutorialTest.testTutorial) at 94

Check failure on line 1 in TutorialTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

TutorialTest.testTutorial(tutorialFile=icephys.mlx)

Verification failed in tests.unit.TutorialTest/testTutorial(tutorialFile=icephys.mlx).
    ----------------
Raw output
Verification failed in tests.unit.TutorialTest/testTutorial(tutorialFile=icephys.mlx).
    ----------------
    Test Diagnostic:
    ----------------
    Message: Message: argument missing
    Location: acquisition/izcs
     File: test_new_icephys.nwb
    
    ---------------------
    Framework Diagnostic:
    ---------------------
    verifyLessThan failed.
    --> The value must be less than the maximum value.
    
    Actual Value:
         3
    Maximum Value (Exclusive):
         1
    ------------------
    Stack Information:
    ------------------
    In /home/runner/work/matnwb/matnwb/+tests/+unit/TutorialTest.m (TutorialTest.inspectTutorialFileWithNwbInspector) at 136
    In /home/runner/work/matnwb/matnwb/+tests/+unit/TutorialTest.m (TutorialTest.testTutorial) at 94Verification failed in tests.unit.TutorialTest/testTutorial(tutorialFile=icephys.mlx).
    ----------------
    Test Diagnostic:
    ----------------
    Message: Message: argument missing
    Location: acquisition/izcs
     File: test_new_icephys.nwb
    
    ---------------------
    Framework Diagnostic:
    ---------------------
    verifyLessThan failed.
    --> The value must be less than the maximum value.
    
    Actual Value:
         3
    Maximum Value (Exclusive):
         1
    ------------------
    Stack Information:
    ------------------
    In /home/runner/work/matnwb/matnwb/+tests/+unit/TutorialTest.m (TutorialTest.inspectTutorialFileWithNwbInspector) at 136
    In /home/runner/work/matnwb/matnwb/+tests/+unit/TutorialTest.m (TutorialTest.testTutorial) at 94Verification failed in tests.unit.TutorialTest/testTutorial(tutorialFile=icephys.mlx).
    ----------------
    Test Diagnostic:
    ----------------
    Message: Message: argument missing
    Location: acquisition/izcs
     File: test_new_icephys.nwb
    
    ---------------------
    Framework Diagnostic:
    ---------------------
    verifyLessThan failed.
    --> The value must be less than the maximum value.
    
    Actual Value:
         3
    Maximum Value (Exclusive):
         1
    ------------------
    Stack Information:
    ------------------
    In /home/runner/work/matnwb/matnwb/+tests/+unit/TutorialTest.m (TutorialTest.inspectTutorialFileWithNwbInspector) at 136
    In /home/runner/work/matnwb/matnwb/+tests/+unit/TutorialTest.m (TutorialTest.testTutorial) at 94