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Improve error message if adding neurodata types of the wrong types as property values #134

Improve error message if adding neurodata types of the wrong types as property values

Improve error message if adding neurodata types of the wrong types as property values #134

GitHub Actions / JUnit Test Report failed Nov 26, 2024 in 0s

219 tests run, 137 passed, 0 skipped, 82 failed.

Annotations

Check failure on line 1 in AlignedSpikeTimesUtilityTest

@github-actions github-actions / JUnit Test Report

AlignedSpikeTimesUtilityTest.psthTest

Error occurred in tests.system.AlignedSpikeTimesUtilityTest/psthTest and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.AlignedSpikeTimesUtilityTest/psthTest and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Error using startsWith
    Not enough input arguments.
    
    Error in matnwb.utility.isNeurodataTypeClassName (line 13)
        if startsWith(typeName, 'types.') && ~startsWith('types.untyped')
    
    Error in matnwb.utility.isNeurodataType (line 11)
            tf = matnwb.utility.isNeurodataTypeClassName(value);
    
    Error in types.util.checkDtype (line 127)
    if matnwb.utility.isNeurodataType(typeDescriptor)
    
    Error in types.hdmf_common/DynamicTable/validate_id (line 91)
    
    Error in types.hdmf_common/DynamicTable/set.id (line 47)
    
    Error in types.hdmf_common/DynamicTable (line 33)
    
    Error in types.core/TimeIntervals (line 21)
    
    Error in tests.system.AlignedSpikeTimesUtilityTest/psthTest (line 32)
                file.intervals_trials = types.core.TimeIntervals(...

Check failure on line 1 in DynamicTableTest

@github-actions github-actions / JUnit Test Report

DynamicTableTest.testAmend

Error occurred in tests.system.DynamicTableTest/testAmend and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.DynamicTableTest/testAmend and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Error using startsWith
    Not enough input arguments.
    
    Error in matnwb.utility.isNeurodataTypeClassName (line 13)
        if startsWith(typeName, 'types.') && ~startsWith('types.untyped')
    
    Error in matnwb.utility.isNeurodataType (line 11)
            tf = matnwb.utility.isNeurodataTypeClassName(value);
    
    Error in types.util.checkDtype (line 127)
    if matnwb.utility.isNeurodataType(typeDescriptor)
    
    Error in types.hdmf_common/DynamicTable/validate_id (line 91)
    
    Error in types.hdmf_common/DynamicTable/set.id (line 47)
    
    Error in types.util.dynamictable.checkConfig (line 59)
                DynamicTable.id = types.hdmf_common.ElementIdentifiers('data', idData);
    
    Error in types.core/TimeIntervals (line 46)
    
    Error in tests.system.DynamicTableTest/addContainer (line 20)
                file.intervals_trials = types.core.TimeIntervals(...
    
    Error in tests.system.NwbTestInterface/setupMethod (line 26)
                testCase.addContainer(testCase.file);

Check failure on line 1 in DynamicTableTest

@github-actions github-actions / JUnit Test Report

DynamicTableTest.testRoundTrip

Error occurred in tests.system.DynamicTableTest/testRoundTrip and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.DynamicTableTest/testRoundTrip and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Error using startsWith
    Not enough input arguments.
    
    Error in matnwb.utility.isNeurodataTypeClassName (line 13)
        if startsWith(typeName, 'types.') && ~startsWith('types.untyped')
    
    Error in matnwb.utility.isNeurodataType (line 11)
            tf = matnwb.utility.isNeurodataTypeClassName(value);
    
    Error in types.util.checkDtype (line 127)
    if matnwb.utility.isNeurodataType(typeDescriptor)
    
    Error in types.hdmf_common/DynamicTable/validate_id (line 91)
    
    Error in types.hdmf_common/DynamicTable/set.id (line 47)
    
    Error in types.util.dynamictable.checkConfig (line 59)
                DynamicTable.id = types.hdmf_common.ElementIdentifiers('data', idData);
    
    Error in types.core/TimeIntervals (line 46)
    
    Error in tests.system.DynamicTableTest/addContainer (line 20)
                file.intervals_trials = types.core.TimeIntervals(...
    
    Error in tests.system.NwbTestInterface/setupMethod (line 26)
                testCase.addContainer(testCase.file);

Check failure on line 1 in DynamicTableTest

@github-actions github-actions / JUnit Test Report

DynamicTableTest.getNegativeIdTest

Error occurred in tests.system.DynamicTableTest/getNegativeIdTest and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.DynamicTableTest/getNegativeIdTest and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Error using startsWith
    Not enough input arguments.
    
    Error in matnwb.utility.isNeurodataTypeClassName (line 13)
        if startsWith(typeName, 'types.') && ~startsWith('types.untyped')
    
    Error in matnwb.utility.isNeurodataType (line 11)
            tf = matnwb.utility.isNeurodataTypeClassName(value);
    
    Error in types.util.checkDtype (line 127)
    if matnwb.utility.isNeurodataType(typeDescriptor)
    
    Error in types.hdmf_common/DynamicTable/validate_id (line 91)
    
    Error in types.hdmf_common/DynamicTable/set.id (line 47)
    
    Error in types.util.dynamictable.checkConfig (line 59)
                DynamicTable.id = types.hdmf_common.ElementIdentifiers('data', idData);
    
    Error in types.core/TimeIntervals (line 46)
    
    Error in tests.system.DynamicTableTest/addContainer (line 20)
                file.intervals_trials = types.core.TimeIntervals(...
    
    Error in tests.system.NwbTestInterface/setupMethod (line 26)
                testCase.addContainer(testCase.file);

Check failure on line 1 in DynamicTableTest

@github-actions github-actions / JUnit Test Report

DynamicTableTest.getRowTest

Error occurred in tests.system.DynamicTableTest/getRowTest and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.DynamicTableTest/getRowTest and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Error using startsWith
    Not enough input arguments.
    
    Error in matnwb.utility.isNeurodataTypeClassName (line 13)
        if startsWith(typeName, 'types.') && ~startsWith('types.untyped')
    
    Error in matnwb.utility.isNeurodataType (line 11)
            tf = matnwb.utility.isNeurodataTypeClassName(value);
    
    Error in types.util.checkDtype (line 127)
    if matnwb.utility.isNeurodataType(typeDescriptor)
    
    Error in types.hdmf_common/DynamicTable/validate_id (line 91)
    
    Error in types.hdmf_common/DynamicTable/set.id (line 47)
    
    Error in types.util.dynamictable.checkConfig (line 59)
                DynamicTable.id = types.hdmf_common.ElementIdentifiers('data', idData);
    
    Error in types.core/TimeIntervals (line 46)
    
    Error in tests.system.DynamicTableTest/addContainer (line 20)
                file.intervals_trials = types.core.TimeIntervals(...
    
    Error in tests.system.NwbTestInterface/setupMethod (line 26)
                testCase.addContainer(testCase.file);

Check failure on line 1 in DynamicTableTest

@github-actions github-actions / JUnit Test Report

DynamicTableTest.getRowRoundtripTest

Error occurred in tests.system.DynamicTableTest/getRowRoundtripTest and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.DynamicTableTest/getRowRoundtripTest and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Error using startsWith
    Not enough input arguments.
    
    Error in matnwb.utility.isNeurodataTypeClassName (line 13)
        if startsWith(typeName, 'types.') && ~startsWith('types.untyped')
    
    Error in matnwb.utility.isNeurodataType (line 11)
            tf = matnwb.utility.isNeurodataTypeClassName(value);
    
    Error in types.util.checkDtype (line 127)
    if matnwb.utility.isNeurodataType(typeDescriptor)
    
    Error in types.hdmf_common/DynamicTable/validate_id (line 91)
    
    Error in types.hdmf_common/DynamicTable/set.id (line 47)
    
    Error in types.util.dynamictable.checkConfig (line 59)
                DynamicTable.id = types.hdmf_common.ElementIdentifiers('data', idData);
    
    Error in types.core/TimeIntervals (line 46)
    
    Error in tests.system.DynamicTableTest/addContainer (line 20)
                file.intervals_trials = types.core.TimeIntervals(...
    
    Error in tests.system.NwbTestInterface/setupMethod (line 26)
                testCase.addContainer(testCase.file);

Check failure on line 1 in DynamicTableTest

@github-actions github-actions / JUnit Test Report

DynamicTableTest.toTableTest

Error occurred in tests.system.DynamicTableTest/toTableTest and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.DynamicTableTest/toTableTest and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Error using startsWith
    Not enough input arguments.
    
    Error in matnwb.utility.isNeurodataTypeClassName (line 13)
        if startsWith(typeName, 'types.') && ~startsWith('types.untyped')
    
    Error in matnwb.utility.isNeurodataType (line 11)
            tf = matnwb.utility.isNeurodataTypeClassName(value);
    
    Error in types.util.checkDtype (line 127)
    if matnwb.utility.isNeurodataType(typeDescriptor)
    
    Error in types.hdmf_common/DynamicTable/validate_id (line 91)
    
    Error in types.hdmf_common/DynamicTable/set.id (line 47)
    
    Error in types.util.dynamictable.checkConfig (line 59)
                DynamicTable.id = types.hdmf_common.ElementIdentifiers('data', idData);
    
    Error in types.core/TimeIntervals (line 46)
    
    Error in tests.system.DynamicTableTest/addContainer (line 20)
                file.intervals_trials = types.core.TimeIntervals(...
    
    Error in tests.system.NwbTestInterface/setupMethod (line 26)
                testCase.addContainer(testCase.file);

Check failure on line 1 in DynamicTableTest

@github-actions github-actions / JUnit Test Report

DynamicTableTest.toTableNdArrayTest

Error occurred in tests.system.DynamicTableTest/toTableNdArrayTest and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.DynamicTableTest/toTableNdArrayTest and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Error using startsWith
    Not enough input arguments.
    
    Error in matnwb.utility.isNeurodataTypeClassName (line 13)
        if startsWith(typeName, 'types.') && ~startsWith('types.untyped')
    
    Error in matnwb.utility.isNeurodataType (line 11)
            tf = matnwb.utility.isNeurodataTypeClassName(value);
    
    Error in types.util.checkDtype (line 127)
    if matnwb.utility.isNeurodataType(typeDescriptor)
    
    Error in types.hdmf_common/DynamicTable/validate_id (line 91)
    
    Error in types.hdmf_common/DynamicTable/set.id (line 47)
    
    Error in types.util.dynamictable.checkConfig (line 59)
                DynamicTable.id = types.hdmf_common.ElementIdentifiers('data', idData);
    
    Error in types.core/TimeIntervals (line 46)
    
    Error in tests.system.DynamicTableTest/addContainer (line 20)
                file.intervals_trials = types.core.TimeIntervals(...
    
    Error in tests.system.NwbTestInterface/setupMethod (line 26)
                testCase.addContainer(testCase.file);

Check failure on line 1 in DynamicTableTest

@github-actions github-actions / JUnit Test Report

DynamicTableTest.DynamicTableCheckTest

Error occurred in tests.system.DynamicTableTest/DynamicTableCheckTest and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.DynamicTableTest/DynamicTableCheckTest and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Error using startsWith
    Not enough input arguments.
    
    Error in matnwb.utility.isNeurodataTypeClassName (line 13)
        if startsWith(typeName, 'types.') && ~startsWith('types.untyped')
    
    Error in matnwb.utility.isNeurodataType (line 11)
            tf = matnwb.utility.isNeurodataTypeClassName(value);
    
    Error in types.util.checkDtype (line 127)
    if matnwb.utility.isNeurodataType(typeDescriptor)
    
    Error in types.hdmf_common/DynamicTable/validate_id (line 91)
    
    Error in types.hdmf_common/DynamicTable/set.id (line 47)
    
    Error in types.util.dynamictable.checkConfig (line 59)
                DynamicTable.id = types.hdmf_common.ElementIdentifiers('data', idData);
    
    Error in types.core/TimeIntervals (line 46)
    
    Error in tests.system.DynamicTableTest/addContainer (line 20)
                file.intervals_trials = types.core.TimeIntervals(...
    
    Error in tests.system.NwbTestInterface/setupMethod (line 26)
                testCase.addContainer(testCase.file);

Check failure on line 1 in DynamicTableTest

@github-actions github-actions / JUnit Test Report

DynamicTableTest.testEmptyTable

Error occurred in tests.system.DynamicTableTest/testEmptyTable and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.DynamicTableTest/testEmptyTable and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Error using startsWith
    Not enough input arguments.
    
    Error in matnwb.utility.isNeurodataTypeClassName (line 13)
        if startsWith(typeName, 'types.') && ~startsWith('types.untyped')
    
    Error in matnwb.utility.isNeurodataType (line 11)
            tf = matnwb.utility.isNeurodataTypeClassName(value);
    
    Error in types.util.checkDtype (line 127)
    if matnwb.utility.isNeurodataType(typeDescriptor)
    
    Error in types.hdmf_common/DynamicTable/validate_id (line 91)
    
    Error in types.hdmf_common/DynamicTable/set.id (line 47)
    
    Error in types.util.dynamictable.checkConfig (line 59)
                DynamicTable.id = types.hdmf_common.ElementIdentifiers('data', idData);
    
    Error in types.core/TimeIntervals (line 46)
    
    Error in tests.system.DynamicTableTest/addContainer (line 20)
                file.intervals_trials = types.core.TimeIntervals(...
    
    Error in tests.system.NwbTestInterface/setupMethod (line 26)
                testCase.addContainer(testCase.file);

Check failure on line 1 in ElectricalSeriesIOTest

@github-actions github-actions / JUnit Test Report

ElectricalSeriesIOTest.testRoundTrip

Error occurred in tests.system.ElectricalSeriesIOTest/testRoundTrip and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.ElectricalSeriesIOTest/testRoundTrip and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Error using startsWith
    Not enough input arguments.
    
    Error in matnwb.utility.isNeurodataTypeClassName (line 13)
        if startsWith(typeName, 'types.') && ~startsWith('types.untyped')
    
    Error in matnwb.utility.isNeurodataType (line 11)
            tf = matnwb.utility.isNeurodataTypeClassName(value);
    
    Error in types.util.checkDtype (line 127)
    if matnwb.utility.isNeurodataType(typeDescriptor)
    
    Error in types.hdmf_common/DynamicTable/validate_id (line 91)
    
    Error in types.hdmf_common/DynamicTable/set.id (line 47)
    
    Error in types.hdmf_common/DynamicTable (line 33)
    
    Error in util.createElectrodeTable (line 2)
    table = types.hdmf_common.DynamicTable(...
    
    Error in tests.system.ElectricalSeriesIOTest/addContainer (line 14)
                electrodes = util.createElectrodeTable();
    
    Error in tests.system.NwbTestInterface/setupMethod (line 26)
                testCase.addContainer(testCase.file);

Check failure on line 1 in ElectricalSeriesIOTest

@github-actions github-actions / JUnit Test Report

ElectricalSeriesIOTest.testOutToPyNWB

Error occurred in tests.system.ElectricalSeriesIOTest/testOutToPyNWB and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.ElectricalSeriesIOTest/testOutToPyNWB and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Error using startsWith
    Not enough input arguments.
    
    Error in matnwb.utility.isNeurodataTypeClassName (line 13)
        if startsWith(typeName, 'types.') && ~startsWith('types.untyped')
    
    Error in matnwb.utility.isNeurodataType (line 11)
            tf = matnwb.utility.isNeurodataTypeClassName(value);
    
    Error in types.util.checkDtype (line 127)
    if matnwb.utility.isNeurodataType(typeDescriptor)
    
    Error in types.hdmf_common/DynamicTable/validate_id (line 91)
    
    Error in types.hdmf_common/DynamicTable/set.id (line 47)
    
    Error in types.hdmf_common/DynamicTable (line 33)
    
    Error in util.createElectrodeTable (line 2)
    table = types.hdmf_common.DynamicTable(...
    
    Error in tests.system.ElectricalSeriesIOTest/addContainer (line 14)
                electrodes = util.createElectrodeTable();
    
    Error in tests.system.NwbTestInterface/setupMethod (line 26)
                testCase.addContainer(testCase.file);

Check failure on line 1 in ElectricalSeriesIOTest

@github-actions github-actions / JUnit Test Report

ElectricalSeriesIOTest.testInFromPyNWB

Error occurred in tests.system.ElectricalSeriesIOTest/testInFromPyNWB and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.ElectricalSeriesIOTest/testInFromPyNWB and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:minrhs'
    --------------
    Error Details:
    --------------
    Error using startsWith
    Not enough input arguments.
    
    Error in matnwb.utility.isNeurodataTypeClassName (line 13)
        if startsWith(typeName, 'types.') && ~startsWith('types.untyped')
    
    Error in matnwb.utility.isNeurodataType (line 11)
            tf = matnwb.utility.isNeurodataTypeClassName(value);
    
    Error in types.util.checkDtype (line 127)
    if matnwb.utility.isNeurodataType(typeDescriptor)
    
    Error in types.hdmf_common/DynamicTable/validate_id (line 91)
    
    Error in types.hdmf_common/DynamicTable/set.id (line 47)
    
    Error in types.hdmf_common/DynamicTable (line 33)
    
    Error in util.createElectrodeTable (line 2)
    table = types.hdmf_common.DynamicTable(...
    
    Error in tests.system.ElectricalSeriesIOTest/addContainer (line 14)
                electrodes = util.createElectrodeTable();
    
    Error in tests.system.NwbTestInterface/setupMethod (line 26)
                testCase.addContainer(testCase.file);

Check failure on line 1 in ElectrodeGroupIOTest

@github-actions github-actions / JUnit Test Report

ElectrodeGroupIOTest.testRoundTrip

Error occurred in tests.system.ElectrodeGroupIOTest/testRoundTrip and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.ElectrodeGroupIOTest/testRoundTrip and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:Containers:Map:NoKey'
    --------------
    Error Details:
    --------------
    Error using indexing
    The specified key is not present in this container.
    
    Error in types.untyped.Set/get (line 170)
                    o{i} = obj.Map(name{i});
    
    Error in tests.system.ElectrodeGroupIOTest/getContainer (line 15)
                c = file.general_extracellular_ephys.get('elec1');
    
    Error in tests.system.RoundTripTest/testRoundTrip (line 6)
                writeContainer = testCase.getContainer(testCase.file);

Check failure on line 1 in ElectrodeGroupIOTest

@github-actions github-actions / JUnit Test Report

ElectrodeGroupIOTest.testOutToPyNWB

Verification failed in tests.system.ElectrodeGroupIOTest/testOutToPyNWB.
    ----------------
Raw output
Verification failed in tests.system.ElectrodeGroupIOTest/testOutToPyNWB.
    ----------------
    Test Diagnostic:
    ----------------
    E
    ======================================================================
    ERROR: testInFromMatNWB (PyNWBIOTest.ElectrodeGroupIOTest)
    ----------------------------------------------------------------------
    Traceback (most recent call last):
      File "/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py", line 37, in testInFromMatNWB
        matcontainer = self.getContainer(matfile)
      File "/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py", line 133, in getContainer
        return file.get_electrode_group(self.container.name)
      File "/opt/hostedtoolcache/Python/3.10.15/x64/lib/python3.10/site-packages/hdmf/utils.py", line 668, in func_call
        return func(args[0], **pargs)
      File "/opt/hostedtoolcache/Python/3.10.15/x64/lib/python3.10/site-packages/hdmf/container.py", line 1117, in _func
        raise KeyError(msg)
    KeyError: "'elec1' not found in electrode_groups of NWBFile 'root'."
    
    ----------------------------------------------------------------------
    Ran 1 test in 0.045s
    
    FAILED (errors=1)
    
    ------------------
    Stack Information:
    ------------------
    In /home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.m (PyNWBIOTest.testOutToPyNWB) at 15

Check failure on line 1 in ElectrodeGroupIOTest

@github-actions github-actions / JUnit Test Report

ElectrodeGroupIOTest.testInFromPyNWB

Error occurred in tests.system.ElectrodeGroupIOTest/testInFromPyNWB and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.ElectrodeGroupIOTest/testInFromPyNWB and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:Containers:Map:NoKey'
    --------------
    Error Details:
    --------------
    Error using indexing
    The specified key is not present in this container.
    
    Error in types.untyped.Set/get (line 170)
                    o{i} = obj.Map(name{i});
    
    Error in tests.system.ElectrodeGroupIOTest/getContainer (line 15)
                c = file.general_extracellular_ephys.get('elec1');
    
    Error in tests.system.PyNWBIOTest/testInFromPyNWB (line 26)
                pycontainer = testCase.getContainer(pyfile);

Check failure on line 1 in ImagingPlaneIOTest

@github-actions github-actions / JUnit Test Report

ImagingPlaneIOTest.testRoundTrip

Error occurred in tests.system.ImagingPlaneIOTest/testRoundTrip and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.ImagingPlaneIOTest/testRoundTrip and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:Containers:Map:NoKey'
    --------------
    Error Details:
    --------------
    Error using indexing
    The specified key is not present in this container.
    
    Error in types.untyped.Set/get (line 170)
                    o{i} = obj.Map(name{i});
    
    Error in tests.system.ImagingPlaneIOTest/getContainer (line 22)
                c = file.general_optophysiology.get('imgpln1');
    
    Error in tests.system.RoundTripTest/testRoundTrip (line 6)
                writeContainer = testCase.getContainer(testCase.file);

Check failure on line 1 in ImagingPlaneIOTest

@github-actions github-actions / JUnit Test Report

ImagingPlaneIOTest.testOutToPyNWB

Verification failed in tests.system.ImagingPlaneIOTest/testOutToPyNWB.
    ----------------
Raw output
Verification failed in tests.system.ImagingPlaneIOTest/testOutToPyNWB.
    ----------------
    Test Diagnostic:
    ----------------
    E
    ======================================================================
    ERROR: testInFromMatNWB (PyNWBIOTest.ImagingPlaneIOTest)
    ----------------------------------------------------------------------
    Traceback (most recent call last):
      File "/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py", line 37, in testInFromMatNWB
        matcontainer = self.getContainer(matfile)
      File "/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py", line 170, in getContainer
        return file.get_imaging_plane(self.container.name)
      File "/opt/hostedtoolcache/Python/3.10.15/x64/lib/python3.10/site-packages/hdmf/utils.py", line 668, in func_call
        return func(args[0], **pargs)
      File "/opt/hostedtoolcache/Python/3.10.15/x64/lib/python3.10/site-packages/hdmf/container.py", line 1117, in _func
        raise KeyError(msg)
    KeyError: "'imgpln1' not found in imaging_planes of NWBFile 'root'."
    
    ----------------------------------------------------------------------
    Ran 1 test in 0.095s
    
    FAILED (errors=1)
    
    ------------------
    Stack Information:
    ------------------
    In /home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.m (PyNWBIOTest.testOutToPyNWB) at 15

Check failure on line 1 in ImagingPlaneIOTest

@github-actions github-actions / JUnit Test Report

ImagingPlaneIOTest.testInFromPyNWB

Error occurred in tests.system.ImagingPlaneIOTest/testInFromPyNWB and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.ImagingPlaneIOTest/testInFromPyNWB and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:Containers:Map:NoKey'
    --------------
    Error Details:
    --------------
    Error using indexing
    The specified key is not present in this container.
    
    Error in types.untyped.Set/get (line 170)
                    o{i} = obj.Map(name{i});
    
    Error in tests.system.ImagingPlaneIOTest/getContainer (line 22)
                c = file.general_optophysiology.get('imgpln1');
    
    Error in tests.system.PyNWBIOTest/testInFromPyNWB (line 26)
                pycontainer = testCase.getContainer(pyfile);

Check failure on line 1 in PhotonSeriesIOTest

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PhotonSeriesIOTest.testAmend

Error occurred in tests.system.PhotonSeriesIOTest/testAmend and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.PhotonSeriesIOTest/testAmend and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:Containers:Map:NoKey'
    --------------
    Error Details:
    --------------
    Error using indexing
    The specified key is not present in this container.
    
    Error in types.untyped.Set/get (line 170)
                    o{i} = obj.Map(name{i});
    
    Error in tests.system.PhotonSeriesIOTest/appendContainer (line 39)
                oldImagingPlane = file.general_optophysiology.get('imgpln1');
    
    Error in tests.system.AmendTest/testAmend (line 6)
                testCase.appendContainer(testCase.file);

Check failure on line 1 in PhotonSeriesIOTest

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PhotonSeriesIOTest.testRoundTrip

Error occurred in tests.system.PhotonSeriesIOTest/testRoundTrip and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.PhotonSeriesIOTest/testRoundTrip and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:Containers:Map:NoKey'
    --------------
    Error Details:
    --------------
    Error using indexing
    The specified key is not present in this container.
    
    Error in types.untyped.Set/get (line 170)
                    o{i} = obj.Map(name{i});
    
    Error in tests.system.PhotonSeriesIOTest/getContainer (line 35)
                c = file.acquisition.get('test_2ps');
    
    Error in tests.system.RoundTripTest/testRoundTrip (line 6)
                writeContainer = testCase.getContainer(testCase.file);

Check failure on line 1 in PhotonSeriesIOTest

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PhotonSeriesIOTest.testOutToPyNWB

Verification failed in tests.system.PhotonSeriesIOTest/testOutToPyNWB.
    ----------------
Raw output
Verification failed in tests.system.PhotonSeriesIOTest/testOutToPyNWB.
    ----------------
    Test Diagnostic:
    ----------------
    /opt/hostedtoolcache/Python/3.10.15/x64/lib/python3.10/site-packages/pynwb/image.py:106: UserWarning: TwoPhotonSeries 'test_2ps': Length of data does not match length of timestamps. Your data may be transposed. Time should be on the 0th dimension
      warnings.warn(
    E
    ======================================================================
    ERROR: testInFromMatNWB (PyNWBIOTest.PhotonSeriesIOTest)
    ----------------------------------------------------------------------
    Traceback (most recent call last):
      File "/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py", line 37, in testInFromMatNWB
        matcontainer = self.getContainer(matfile)
      File "/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py", line 195, in getContainer
        return file.get_acquisition(self.container.name)
      File "/opt/hostedtoolcache/Python/3.10.15/x64/lib/python3.10/site-packages/hdmf/utils.py", line 668, in func_call
        return func(args[0], **pargs)
      File "/opt/hostedtoolcache/Python/3.10.15/x64/lib/python3.10/site-packages/hdmf/container.py", line 1117, in _func
        raise KeyError(msg)
    KeyError: "'test_2ps' not found in acquisition of NWBFile 'root'."
    
    ----------------------------------------------------------------------
    Ran 1 test in 0.181s
    
    FAILED (errors=1)
    
    ------------------
    Stack Information:
    ------------------
    In /home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.m (PyNWBIOTest.testOutToPyNWB) at 15

Check failure on line 1 in PhotonSeriesIOTest

@github-actions github-actions / JUnit Test Report

PhotonSeriesIOTest.testInFromPyNWB

Error occurred in tests.system.PhotonSeriesIOTest/testInFromPyNWB and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.PhotonSeriesIOTest/testInFromPyNWB and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:Containers:Map:NoKey'
    --------------
    Error Details:
    --------------
    Error using indexing
    The specified key is not present in this container.
    
    Error in types.untyped.Set/get (line 170)
                    o{i} = obj.Map(name{i});
    
    Error in tests.system.PhotonSeriesIOTest/getContainer (line 35)
                c = file.acquisition.get('test_2ps');
    
    Error in tests.system.PyNWBIOTest/testInFromPyNWB (line 26)
                pycontainer = testCase.getContainer(pyfile);

Check failure on line 1 in TimeSeriesIOTest

@github-actions github-actions / JUnit Test Report

TimeSeriesIOTest.testRoundTrip

Error occurred in tests.system.TimeSeriesIOTest/testRoundTrip and it did not run to completion.
    ---------
Raw output
Error occurred in tests.system.TimeSeriesIOTest/testRoundTrip and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:Containers:Map:NoKey'
    --------------
    Error Details:
    --------------
    Error using indexing
    The specified key is not present in this container.
    
    Error in types.untyped.Set/get (line 170)
                    o{i} = obj.Map(name{i});
    
    Error in tests.system.TimeSeriesIOTest/getContainer (line 13)
          c = file.acquisition.get('test_timeseries');
    
    Error in tests.system.RoundTripTest/testRoundTrip (line 6)
                writeContainer = testCase.getContainer(testCase.file);

Check failure on line 1 in TimeSeriesIOTest

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TimeSeriesIOTest.testOutToPyNWB

Verification failed in tests.system.TimeSeriesIOTest/testOutToPyNWB.
    ----------------
Raw output
Verification failed in tests.system.TimeSeriesIOTest/testOutToPyNWB.
    ----------------
    Test Diagnostic:
    ----------------
    E
    ======================================================================
    ERROR: testInFromMatNWB (PyNWBIOTest.TimeSeriesIOTest)
    ----------------------------------------------------------------------
    Traceback (most recent call last):
      File "/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py", line 37, in testInFromMatNWB
        matcontainer = self.getContainer(matfile)
      File "/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py", line 123, in getContainer
        return file.get_acquisition(self.container.name)
      File "/opt/hostedtoolcache/Python/3.10.15/x64/lib/python3.10/site-packages/hdmf/utils.py", line 668, in func_call
        return func(args[0], **pargs)
      File "/opt/hostedtoolcache/Python/3.10.15/x64/lib/python3.10/site-packages/hdmf/container.py", line 1117, in _func
        raise KeyError(msg)
    KeyError: "'test_timeseries' not found in acquisition of NWBFile 'root'."
    
    ----------------------------------------------------------------------
    Ran 1 test in 0.067s
    
    FAILED (errors=1)
    
    ------------------
    Stack Information:
    ------------------
    In /home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.m (PyNWBIOTest.testOutToPyNWB) at 15