Update documentation to use sphinx #161
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| # Run and publish MATLAB tests with coverage | |
| name: Run tests | |
| on: | |
| pull_request: | |
| branches: | |
| - master | |
| paths-ignore: | |
| - "*.md" | |
| - "*.codespellrc" | |
| - ".github/**" | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| run_tests: | |
| name: Run MATLAB tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Install python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - name: Configure python env | |
| run: | | |
| python -m pip install -U pip | |
| pip install -r +tests/requirements.txt | |
| python -m pip list | |
| echo "HDF5_PLUGIN_PATH=$(python -c "import hdf5plugin; print(hdf5plugin.PLUGINS_PATH)")" >> "$GITHUB_ENV" | |
| echo $( python -m pip show nwbinspector | grep ^Location: | awk '{print $2}' ) | |
| - name: Install MATLAB | |
| uses: matlab-actions/setup-matlab@v2 | |
| with: | |
| release: R2024a # this is necessary to test dynamic filters | |
| - name: Run tests | |
| uses: matlab-actions/run-command@v2 | |
| with: | |
| command: | | |
| pyenv("ExecutionMode", "OutOfProcess"); | |
| results = assertSuccess(nwbtest); | |
| assert(~isempty(results), 'No tests ran'); | |
| - name: Upload JUnit results | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-results | |
| path: testResults.xml | |
| retention-days: 1 | |
| - name: Upload coverage results | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-coverage | |
| path: ./coverage.xml | |
| publish_junit: | |
| name: Publish JUnit test results | |
| runs-on: ubuntu-latest | |
| if: always() | |
| needs: [run_tests] | |
| steps: | |
| - name: Retrieve result files | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: test-results | |
| - name: Publish test results | |
| uses: mikepenz/action-junit-report@v4 | |
| with: | |
| report_paths: 'testResults.xml' | |
| publish_coverage: | |
| name: Publish Cobertura test coverage | |
| runs-on: ubuntu-latest | |
| needs: [run_tests] | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: retrieve code coverage files | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: test-coverage | |
| - name: Publish on coverage results on Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: coverage.xml | |
| name: codecov-matnwb | |
| verbose: true |