Code

Add data read#85

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oruebel wants to merge 69 commits intomainNeurodataWithoutBorders/aqnwb:mainfrom add_readNeurodataWithoutBorders/aqnwb:add_readCopy head branch name to clipboard

+2,167-749

Commits

Commits on Aug 31, 2024

• Define base classes for reading

  oruebel

  committed
  1e1f041

• First draft of reading datasets and attributes

  oruebel

  committed
  e58f50f

• Split reading of attribute and dataset to separate functions

  oruebel

  committed
  250a66b

• Remove debug print

  oruebel

  committed
  e1bfa2e

• Add functions to construct ReadDatasetWrapper and ReadAttributeWrapper from BaseIO

  oruebel

  committed
  4aedefd

• Fix formatting

  oruebel

  committed
  4dae171

• Add test for using the ReadDatasetWrapper

  oruebel

  committed
  140809e

• Start refactor containers for read

  oruebel

  committed
  4d7b1ea

• Fix format

  oruebel

  committed
  2db4bfe

Commits on Sep 1, 2024

• Read ElectricalSeries.data example working

  oruebel

  committed
  b2959d2

• Revert change to tests used for debugging

  oruebel

  committed
  37d30d3

• Fix codespell issue

  oruebel

  committed
  6cfe416

• Move read example to an example file

  oruebel

  committed
  3d86aff

• Fix bug in Container::create

  oruebel

  committed
  3fc1d7a

• Add example for data read

  oruebel

  committed
  b09a4fa

• Fix spelling error

  oruebel

  committed
  970f4c8

• Add user docs for data read

  oruebel

  committed
  26fbae9

• Update read user docs

  oruebel

  committed
  4299f99

Commits on Sep 2, 2024

• Add toc

  oruebel

  committed
  9c9301c

• Add read software design figure and more details on the design

  oruebel

  committed
  447337a

• Some adjustment to the edges in the fig

  oruebel

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  e3d4330

• Some adjustment to the edges in the fig

  oruebel

  committed
  77f0861

• Add intro for data read page

  oruebel

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  5190731

Commits on Sep 3, 2024

• Make Container::create inline

  oruebel

  committed
  f08e42f

• Make DataBlock::fromGeneric inline

  oruebel

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  1a754b9

• Implement function to allow us to get the storage object type for a given path

  oruebel

  committed
  ebfbdf1

• Rename getObjectType to getStroageObjectType

  oruebel

  committed
  3022861

• Fix reading of attributes and add TimeSeries.resolution read

  oruebel

  committed
  6ba32a5

• Add example for reading an attribute

  oruebel

  committed
  1fb5d95

• Add ReadDataWrapperBase as common base class for ReadDatasetWrapper and ReadAttributeWrapper

  oruebel

  committed
  676b978

• Fix docstring

  oruebel

  committed
  14c8362

• Minor fixed to docs

  oruebel

  committed
  d2b1c23

• Mention ReadDataWrapperBase in the read dox page

  oruebel

  committed
  78825f2

• Merge branch 'main' into add_read

  oruebel

  committed
  85db320

• Fix unit tests after merge

  oruebel

  committed
  5c2faae

• Remove NWBFile.identifierText property

  oruebel

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  c481260

Commits on Sep 4, 2024

• Allow setting of value type template parameter for ReadDataWrapperBase and subtypes

  oruebel

  committed
  b418149

• Save the std::type_index as part of the DataBlock to support runtime checking

  oruebel

  committed
  1f3ad24

Commits on Sep 5, 2024

• Fix #88 move io classes to their own module

  oruebel

  committed
  99b5d4e

• Refactor to add IO namespace to match folder structure

  oruebel

  committed
  04117e9

• Move HDF5RecordingData to its own hpp/cpp files

  oruebel

  committed
  82a4c08

• Moved read I/O classes to new ReadIO.hpp

  oruebel

  committed
  6554e29

• Refactor the read data wrappers to use a single ReadDataWrapper class for both Attributes and Datasets

  oruebel

  committed
  bff7121

Commits on Sep 6, 2024

• Replace redundant ReadObjectType with StorageObjectType

  oruebel

  committed
  53365ff

• Add traits for ReadObjectWrapper to prevent instantiation for Group and Undefined types

  oruebel

  committed
  c66b3bc

• Fix formatting

  oruebel

  committed
  0da4800

• Fix spelling error

  oruebel

  committed
  d161c47

• Inline functions in ReadIO.hpp

  oruebel

  committed
  58e5afb

• Some minor fixes

  oruebel

  committed
  b7cc149

Commits on Sep 7, 2024

• Merge branch 'main' into add_read

  oruebel

  authored
  b9c6c9b

Commits on Sep 8, 2024

• Update ElectrodGroup to provide standard Container constructor and move args to initalize

  oruebel

  committed
  69c3c4e

• Fix formatting

  oruebel

  committed
  e75c7ad

Commits on Sep 9, 2024

• Merge branch 'main' into add_read

  oruebel

  committed
  5ab8464

• Fix ElectricalSeries

  oruebel

  committed
  803dfcf

Commits on Sep 19, 2024

• Run test workflows on all PRs

  oruebel

  committed
  cdffc74

• Fix static assert for ReadDataWrapper

  oruebel

  committed
  89f6d29

• Sync add_read with main branch (#101)

  Show description for 5608c5a
  oruebel

  authored
  5608c5a

• Merge branch 'main' into add_read

  oruebel

  committed
  c7ced4e

Commits on Sep 20, 2024

• Merge branch 'main' into add_read

  oruebel

  committed
  dd01ad3

• Fix formatting and docs error after merge with main

  oruebel

  committed
  968fcf0

Commits on Sep 24, 2024

• Update docs/pages/userdocs/read.dox

  Show description for bfaabb8
  

  oruebel

  and

  stephprince

  authored
  bfaabb8

• Update src/io/ReadIO.hpp

  Show description for a439212
  

  oruebel

  and

  stephprince

  authored
  a439212

• Update src/io/ReadIO.hpp

  oruebel

  authored
  5f28fb0

• Rename ReadDataWrapper.is_dataset

  oruebel

  committed
  a9725b2

• Update src/io/hdf5/HDF5IO.hpp

  Show description for e70949c
  

  oruebel

  and

  stephprince

  authored
  e70949c

• Remove duplicate code in NWBFile

  oruebel

  committed
  d1da5d1

• Remove outdated ToDo item

  oruebel

  committed
  12a86a5

Commits on Oct 22, 2024

• Merge branch 'main' into add_read

  oruebel

  committed
  ae66f33

• Fix build error after merge

  oruebel

  committed
  69df3e0