Fix format

src/nwb/NWBFile.cpp

@@ -122,9 +122,8 @@ Status NWBFile::createElectricalSeries(
     elecGroup.initialize();
 
     // Setup electrical series datasets
-    auto electricalSeries = std::make_unique<ElectricalSeries>(
-        electricalSeriesPath,
-        io);
+    auto electricalSeries =
+        std::make_unique<ElectricalSeries>(electricalSeriesPath, io);
     electricalSeries->initialize(
         dataType,
         channelVector,

src/nwb/base/TimeSeries.cpp

@@ -5,8 +5,7 @@ using namespace AQNWB::NWB;
 // TimeSeries
 
 /** Constructor */
-TimeSeries::TimeSeries(const std::string& path,
-                       std::shared_ptr<BaseIO> io)
+TimeSeries::TimeSeries(const std::string& path, std::shared_ptr<BaseIO> io)
     : Container(path, io)
 {
 }

src/nwb/base/TimeSeries.hpp

@@ -18,8 +18,7 @@ class TimeSeries : public Container
    * @param path The location of the TimeSeries in the file.
    * @param io A shared pointer to the IO object.
    */
-  TimeSeries(const std::string& path,
-             std::shared_ptr<BaseIO> io);
+  TimeSeries(const std::string& path, std::shared_ptr<BaseIO> io);
 
   /**
    * @brief Destructor

src/nwb/device/Device.cpp

@@ -4,8 +4,7 @@ using namespace AQNWB::NWB;
 
 // Device
 /** Constructor */
-Device::Device(const std::string& path,
-               std::shared_ptr<BaseIO> io)
+Device::Device(const std::string& path, std::shared_ptr<BaseIO> io)
     : Container(path, io)
 {
 }

src/nwb/device/Device.hpp

@@ -19,8 +19,7 @@ class Device : public Container
    * @param path The location of the device in the file.
    * @param io A shared pointer to the IO object.
    */
-  Device(const std::string& path,
-         std::shared_ptr<BaseIO> io);
+  Device(const std::string& path, std::shared_ptr<BaseIO> io);
 
   /**
    * @brief Destructor
@@ -48,6 +47,5 @@ class Device : public Container
    * @return The description of the device.
    */
   std::string getDescription() const;
-
 };
 }  // namespace AQNWB::NWB

src/nwb/ecephys/ElectricalSeries.cpp

@@ -10,8 +10,7 @@ using namespace AQNWB::NWB;
 /** Constructor */
 ElectricalSeries::ElectricalSeries(const std::string& path,
                                    std::shared_ptr<BaseIO> io)
-    : TimeSeries(path,
-                 io)
+    : TimeSeries(path, io)
 {
 }
 
@@ -20,23 +19,23 @@ ElectricalSeries::~ElectricalSeries() {}
 
 /** Initialization function*/
 void ElectricalSeries::initialize(const BaseDataType& dataType,
-                  const Types::ChannelVector& channelVector,
-                  const std::string& description,
-                  const SizeArray& dsetSize,
-                  const SizeArray& chunkSize,
-                  const float& conversion,
-                  const float& resolution,
-                  const float& offset)
+                                  const Types::ChannelVector& channelVector,
+                                  const std::string& description,
+                                  const SizeArray& dsetSize,
+                                  const SizeArray& chunkSize,
+                                  const float& conversion,
+                                  const float& resolution,
+                                  const float& offset)
 {
   TimeSeries::initialize(dataType,
-                        "volts",
-                        description,
-                        channelVector[0].comments,
-                        dsetSize,
-                        chunkSize,
-                        channelVector[0].getConversion(),
-                        resolution,
-                        offset);
+                         "volts",
+                         description,
+                         channelVector[0].comments,
+                         dsetSize,
+                         chunkSize,
+                         channelVector[0].getConversion(),
+                         resolution,
+                         offset);
 
   // setup variables based on number of channels
   std::vector<SizeType> electrodeInds(channelVector.size());

src/nwb/ecephys/ElectricalSeries.hpp

@@ -19,8 +19,7 @@ class ElectricalSeries : public TimeSeries
    * @param path The location of the ElectricalSeries in the file.
    * @param io A shared pointer to the IO object.
    */
-  ElectricalSeries(const std::string& path,
-                   std::shared_ptr<BaseIO> io);
+  ElectricalSeries(const std::string& path, std::shared_ptr<BaseIO> io);
 
   /**
    * @brief Destructor

src/nwb/file/ElectrodeTable.cpp

@@ -15,10 +15,10 @@ ElectrodeTable::ElectrodeTable(std::shared_ptr<BaseIO> io)
 
 ElectrodeTable::ElectrodeTable(const std::string& path,
                                std::shared_ptr<BaseIO> io)
- : DynamicTable(electrodeTablePath,  // use the electrodeTablePath
+    : DynamicTable(electrodeTablePath,  // use the electrodeTablePath
                    io)
 {
-   assert(path == electrodeTablePath);
+  assert(path == electrodeTablePath);
 }
 
 /** Destructor */

src/nwb/file/ElectrodeTable.hpp

@@ -37,7 +37,8 @@ class ElectrodeTable : public DynamicTable
    * Initializes the ElectrodeTable by creating NWB related attributes and
    * adding required columns.
    */
-  void initialize(const std::string& description = "metadata about extracellular electrodes");
+  void initialize(const std::string& description =
+                      "metadata about extracellular electrodes");
 
   /**
    * @brief Finalizes the ElectrodeTable.

src/nwb/hdmf/base/Container.hpp

@@ -37,11 +37,12 @@ class Container
    */
   std::string getPath() const;
 
-  template <typename T>
+  template<typename T>
   static std::unique_ptr<T> create(const BaseIO& io, const std::string& path)
   {
-     static_assert(std::is_base_of<Container, T>::value, "T must be a derived class of Container");
-     return std::unique_ptr<T>(new T(path, io));
+    static_assert(std::is_base_of<Container, T>::value,
+                  "T must be a derived class of Container");
+    return std::unique_ptr<T>(new T(path, io));
   }
 
 protected:

src/nwb/hdmf/base/Data.hpp

@@ -25,6 +25,8 @@ class Data
   /**
    * @brief Pointer to dataset.
    */
-  std::unique_ptr<BaseRecordingData> dataset;   // TODO For read we may not want this here if we ned Data for reads
+  std::unique_ptr<BaseRecordingData>
+      dataset;  // TODO For read we may not want this here if we ned Data for
+                // reads
 };
 }  // namespace AQNWB::NWB

src/nwb/hdmf/table/DynamicTable.cpp

@@ -5,8 +5,7 @@ using namespace AQNWB::NWB;
 // DynamicTable
 
 /** Constructor */
-DynamicTable::DynamicTable(const std::string& path,
-                           std::shared_ptr<BaseIO> io)
+DynamicTable::DynamicTable(const std::string& path, std::shared_ptr<BaseIO> io)
     : Container(path, io)
     , description(description)
 {

src/nwb/hdmf/table/DynamicTable.hpp

@@ -24,8 +24,7 @@ class DynamicTable : public Container
    * @param path The location of the table in the file.
    * @param io A shared pointer to the IO object.
    */
-  DynamicTable(const std::string& path,
-               std::shared_ptr<BaseIO> io);
+  DynamicTable(const std::string& path, std::shared_ptr<BaseIO> io);
 
   /**
    * @brief Destructor

tests/testBase.cpp

@@ -17,7 +17,8 @@ TEST_CASE("TimeSeries", "[base]")
   std::vector<SizeType> dataShape = {numSamples};
   std::vector<SizeType> positionOffset = {0};
   BaseDataType dataType = BaseDataType::F32;
-  std::vector<float> data = {0,1,2,3,4,5,6,7,8,9}; //  getMockData1D(numSamples);
+  std::vector<float> data = {
+      0, 1, 2, 3, 4, 5, 6, 7, 8, 9};  //  getMockData1D(numSamples);
   BaseDataType timestampsType = BaseDataType::F64;
   std::vector<double> timestamps = getMockTimestamps(numSamples, 1);
 

tests/testEcephys.cpp

@@ -56,9 +56,7 @@ TEST_CASE("ElectricalSeries", "[ecephys]")
     elecTable.initialize();
 
     // setup electrical series
-    NWB::ElectricalSeries es =
-        NWB::ElectricalSeries(dataPath,
-                              io);
+    NWB::ElectricalSeries es = NWB::ElectricalSeries(dataPath, io);
     es.initialize(dataType,
                   mockArrays[0],
                   "no description",
@@ -110,9 +108,7 @@ TEST_CASE("ElectricalSeries", "[ecephys]")
     elecTable.initialize();
 
     // setup electrical series
-    NWB::ElectricalSeries es =
-        NWB::ElectricalSeries(dataPath,
-                              io);
+    NWB::ElectricalSeries es = NWB::ElectricalSeries(dataPath, io);
     es.initialize(dataType,
                   mockArrays[0],
                   "no description",