update mock channel and recording array creation

NeurodataWithoutBorders · Jun 5, 2024 · 21fd33f · 21fd33f
1 parent fe11579
commit 21fd33f
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Showing 3 changed files with 22 additions and 16 deletions.
diff --git a/tests/testEcephys.cpp b/tests/testEcephys.cpp
@@ -20,13 +20,13 @@ TEST_CASE("ElectrodeTable", "[ecephys]")
     io->open();
     io->createGroup("/general");
     io->createGroup("/general/extracellular_ephys");
-    io->createGroup("/general/extracellular_ephys/array1");
+    io->createGroup("/general/extracellular_ephys/array0");
 
     std::vector<SizeType> channelIDs = {0, 1, 2};
     std::vector<Channel> channels = {
-        Channel("ch0", "array1", channelIDs[0], 0),
-        Channel("ch1", "array1", channelIDs[1], 1),
-        Channel("ch2", "array1", channelIDs[2], 2),
+        Channel("ch0", "array0", channelIDs[0], 0),
+        Channel("ch1", "array0", channelIDs[1], 1),
+        Channel("ch2", "array0", channelIDs[2], 2),
     };
 
     NWB::ElectrodeTable electrodeTable(path, io);

diff --git a/tests/testNWBRecording.cpp b/tests/testNWBRecording.cpp
@@ -74,7 +74,7 @@ TEST_CASE("writeContinuousData", "[recording]")
     nwbRecording.closeFile();
 
     // check contents of data
-    std::string dataPath = "/acquisition/array1/data";
+    std::string dataPath = "/acquisition/array0/data";
     std::unique_ptr<H5::H5File> file = std::make_unique<H5::H5File>(path + "Recording1.nwb", H5F_ACC_RDONLY);
     std::unique_ptr<H5::DataSet> dataset = std::make_unique<H5::DataSet>(file->openDataSet(dataPath));
     SizeType numChannelsToRead = numChannels / 2;
@@ -97,7 +97,7 @@ TEST_CASE("writeContinuousData", "[recording]")
     REQUIRE_THAT(dataOut[1], Catch::Matchers::Approx(mockData[1]).margin(1));
 
     // check contents of timestamps
-    std::string timestampsPath = "/acquisition/array1/timestamps";
+    std::string timestampsPath = "/acquisition/array0/timestamps";
     std::unique_ptr<H5::DataSet> tsDataset = std::make_unique<H5::DataSet>(file->openDataSet(timestampsPath));
     double* tsBuffer = new double[numSamples];
 
@@ -119,13 +119,14 @@ TEST_CASE("writeContinuousData", "[recording]")
     }
 
     // setup mock data
-    SizeType numChannels = 2;
+    SizeType numChannels = 1;
+    SizeType numArrays = 1;
     SizeType numSamples = 45000;
     std::vector<float> dataBuffer(numSamples);
     std::vector<double> timestampsBuffer(numSamples);
 
     std::vector<Types::ChannelGroup> mockRecordingArrays =
-        getMockChannelArrays();
+        getMockChannelArrays(numChannels, numArrays);
     std::vector<std::vector<float>> mockData =
         getMockData(numChannels, numSamples);
     std::vector<double> mockTimestamps = getMockTimestamps(numSamples);
@@ -153,7 +154,7 @@ TEST_CASE("writeContinuousData", "[recording]")
     nwbRecording.closeFile();
 
     // check contents of data
-    std::string dataPath = "/acquisition/array1/data";
+    std::string dataPath = "/acquisition/array0/data";
     std::unique_ptr<H5::H5File> file = std::make_unique<H5::H5File>(path + "Recording1.nwb", H5F_ACC_RDONLY);
     std::unique_ptr<H5::DataSet> dataset = std::make_unique<H5::DataSet>(file->openDataSet(dataPath));
 

diff --git a/tests/testUtils.hpp b/tests/testUtils.hpp
@@ -30,14 +30,19 @@ inline std::string getTestFilePath(std::string filename)
   return filepath.u8string();
 }
 
-inline std::vector<Types::ChannelGroup> getMockChannelArrays()
+inline std::vector<Types::ChannelGroup> getMockChannelArrays(SizeType numChannels = 2, SizeType numArrays = 2)
 {
-  Channel ch0 = Channel("ch0", "array1", 0, 0);
-  Channel ch1 = Channel("ch1", "array1", 1, 1);
-  Channel ch2 = Channel("ch2", "array2", 0, 2);
-  Channel ch3 = Channel("ch3", "array2", 1, 3);
-  std::vector<Types::ChannelGroup> arrays = {Types::ChannelGroup {ch0, ch1},
-                                             Types::ChannelGroup {ch2, ch3}};
+  std::vector<Types::ChannelGroup> arrays(numArrays);
+  for (SizeType i = 0; i < numArrays; i++)
+  {
+    std::vector<Channel> chGroup;
+    for (SizeType j = 0; j < numChannels; j++)
+    {
+      Channel ch ("ch" + std::to_string(j), "array" + std::to_string(i), j, i*numArrays + j);
+      chGroup.push_back(ch);
+    }
+    arrays[i] = chGroup;
+  }
   return arrays;
 }