Merge pull request #58 from NeurodataWithoutBorders/fix_docs_image #93
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name: Run tests | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
branches: | |
- main | |
workflow_dispatch: | |
jobs: | |
test: | |
defaults: | |
run: | |
shell: bash | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }}-${{ matrix.os }} | |
cancel-in-progress: true | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [macos-latest, ubuntu-latest] | |
runs-on: ${{ matrix.os }} | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
- name: Install dependencies - ubuntu | |
if: matrix.os == 'ubuntu-latest' | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y libhdf5-dev libboost-all-dev | |
git clone https://github.com/catchorg/Catch2.git | |
cd Catch2 | |
git checkout "v3.5.3" | |
cmake -Bbuild -H. -DBUILD_TESTING=OFF | |
sudo cmake --build build/ --target install | |
- name: Install dependencies - macos | |
if: matrix.os == 'macos-latest' | |
run: brew install hdf5 boost catch2 | |
- name: Configure | |
shell: pwsh | |
run: cmake "--preset=ci-$("${{ matrix.os }}".split("-")[0])" | |
- name: Build | |
run: cmake --build build --config Release -j 2 | |
- name: Install | |
run: cmake --install build --config Release --prefix prefix | |
- name: Test | |
working-directory: build | |
run: ctest --output-on-failure --no-tests=error -C Release -j 2 | |
- name: Upload artifacts | |
uses: actions/upload-artifact@v3 | |
with: | |
name: test-files-${{ matrix.os }} | |
path: | | |
build/tests/data/*.nwb | |
sanitize: | |
needs: test | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
- name: Install dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y libhdf5-dev libboost-all-dev | |
git clone https://github.com/catchorg/Catch2.git | |
cd Catch2 | |
git checkout "v3.5.3" | |
cmake -Bbuild -H. -DBUILD_TESTING=OFF | |
sudo cmake --build build/ --target install | |
- name: Configure | |
run: cmake --preset=ci-sanitize | |
- name: Build | |
run: cmake --build build/sanitize -j 2 | |
- name: Test | |
working-directory: build/sanitize | |
env: | |
ASAN_OPTIONS: "strict_string_checks=1:\ | |
detect_stack_use_after_return=1:\ | |
check_initialization_order=1:\ | |
strict_init_order=1:\ | |
detect_leaks=1:\ | |
halt_on_error=1" | |
UBSAN_OPTIONS: "print_stacktrace=1:\ | |
halt_on_error=1" | |
run: ctest --output-on-failure --no-tests=error -j 2 | |
validate: | |
needs: [test, sanitize] | |
defaults: | |
run: | |
shell: bash | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }}-${{ matrix.os }} | |
cancel-in-progress: true | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [macos-latest, ubuntu-latest] | |
runs-on: ${{ matrix.os }} | |
steps: | |
- name: Download test files | |
uses: actions/download-artifact@v3 | |
with: | |
name: test-files-${{ matrix.os }} | |
path: nwb_files | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.12' | |
- name: Install pynwb and run validation | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install nwbinspector | |
nwbinspector nwb_files --threshold BEST_PRACTICE_VIOLATION |