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Update build.sh #443

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Sep 20, 2023
Merged

Update build.sh #443

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10 changes: 2 additions & 8 deletions recipes/deepretinotopy/build.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -14,11 +14,8 @@ fi
source ../main_setup.sh

neurodocker generate ${neurodocker_buildMode} \
--base-image ubuntu:18.04 \
--pkg-manager apt \
--run="printf '#!/bin/bash\nls -la' > /usr/bin/ll" \
--run="chmod +x /usr/bin/ll" \
--run="mkdir -p ${mountPointList}" \
--base-image ghcr.io/neurodesk/freesurfer_7.3.2:20230216 \
--pkg-manager yum \
--install git \
--miniconda version=py37_4.8.3 \
conda_install='pytorch=1.6.0 torchvision=0.7.0 cudatoolkit=10.2 -c pytorch' \
Expand All @@ -28,9 +25,6 @@ neurodocker generate ${neurodocker_buildMode} \
--run='pip install --no-index torch-cluster -f https://pytorch-geometric.com/whl/torch-1.6.0+cu102.html' \
--run='pip install --no-index torch-spline-conv -f https://pytorch-geometric.com/whl/torch-1.6.0+cu102.html' \
--run='git clone https://github.com/felenitaribeiro/nilearn.git' \
--install git wget connectome-workbench \
--freesurfer version=7.1.1 \
--copy license.txt /opt/freesurfer-7.1.1/license.txt \
--env DEPLOY_BINS=wb_view:wb_command:wb_shortcuts \
--copy README.md /README.md \
> ${toolName}_${toolVersion}.Dockerfile
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