update example SKIPCI

NeuroDesk · Jun 11, 2024 · c149201 · c149201
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diff --git a/recipes/nighres/README.md b/recipes/nighres/README.md
@@ -1,6 +1,6 @@
 
 ----------------------------------
-## REPLACE_WITH_Name_of_Container/1.5.1 ##
+## REPLACE_WITH_Name_of_Container/toolVersion ##
 Short_description_of_container
 
 Example:
@@ -9,7 +9,7 @@ Example:
 
 More documentation can be found here: link_to_documentation
 
-To make the executables and scripts inside this container transparently available in the command line of environments where Neurocommand is installed: ml REPLACE_WITH_Name_of_Container/1.5.1
+To make the executables and scripts inside this container transparently available in the command line of environments where Neurocommand is installed: ml REPLACE_WITH_Name_of_Container/toolVersion
 
 Citation:
 ```

diff --git a/recipes/quickshear/test.sh b/recipes/quickshear/test.sh
@@ -1,5 +1,8 @@
 pip install osfclient
-osf -p bt4ez fetch TOMCAT_DIB/sub-01/ses-01_7T/anat/sub-01_ses-01_7T_T1w_defaced.nii.gz sub-01_ses-01_7T_T1w_defaced.nii.gz
-mv sub-01_ses-01_7T_T1w_defaced.nii.gz input.nii.gz
-mri_synthstrip -i input.nii.gz -o stripped.nii.gz -m mask.nii.gz 
-quickshear input.nii.gz mask.nii.gz defaced.nii.gz
+osf -p ru43c clone .
+cd osfstorage
+unzip 01_bids.zip
+cd 01_bids/sub-170705134431std1312211075243167001/ses-1/anat
+cp sub-170705134431std1312211075243167001_ses-1_run-1_part-mag_T2starw.nii input.nii
+mri_synthstrip -i input.nii -o stripped.nii.gz -m mask.nii.gz 
+quickshear input.nii mask.nii.gz defaced.nii.gz