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should build
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stebo85 committed Oct 20, 2023
1 parent a9a201c commit bff1b7a
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4 changes: 2 additions & 2 deletions recipes/conn/README.md
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## conn/toolVersion ##
## conn/21a ##
conn standalone with Matlab Compiler Runtime

Example:
Expand All @@ -10,6 +10,6 @@ conn

More documentation can be found here: https://web.conn-toolbox.org/tutorials

To run container outside of this environment: ml conn/toolVersion
To run container outside of this environment: ml conn/21a

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6 changes: 4 additions & 2 deletions recipes/conn/build.sh
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Expand Up @@ -20,8 +20,10 @@ neurodocker generate ${neurodocker_buildMode} \
--run="mkdir -p ${mountPointList}" \
--matlabmcr version=2021a method=binaries \
--workdir /opt/${toolName}-${toolVersion}/ \
--run="curl -fsSL --retry 5 https://www.nitrc.org/frs/download.php/12424/conn21a_glnxa64.zip \
| tar -xz -C /opt/${toolName}-${toolVersion}/ --strip-components 1" \
--install wget \
--run="wget --no-check-certificate --progress=bar:force -P /opt/${toolName}-${toolVersion}/ https://www.nitrc.org/frs/download.php/12424/conn${toolVersion}_glnxa64.zip \
&& unzip -q conn${toolVersion}_glnxa64.zip -d /opt/${toolName}-${toolVersion}/ \
&& rm -f conn${toolVersion}_glnxa64.zip" \
--env DEPLOY_BINS=${toolName} \
--install openjdk-8-jre \
--env PATH=/opt/${toolName}-${toolVersion}/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin \
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