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changed name in client test as well; SKIPCI
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vnm-neurodesk committed Nov 18, 2024
1 parent e4ef406 commit 4e95944
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14 changes: 7 additions & 7 deletions recipes/main_build.sh
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@@ -1,16 +1,16 @@
#!/usr/bin/env bash
set -e

function cleanup {
# reset readme
sed -i "s/${toolVersion}/toolVersion/g" README.md
# function cleanup {
# # reset readme
# sed -i "s/${toolVersion}/toolVersion/g" README.md

}
# }

trap cleanup EXIT
# trap cleanup EXIT

# replace toolVersion in README with actual tool version
sed -i "s/toolVersion/${toolVersion}/g" README.md
# # replace toolVersion in README with actual tool version
# sed -i "s/toolVersion/${toolVersion}/g" README.md


echo "buildMode: $buildMode"
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4 changes: 2 additions & 2 deletions recipes/vesselboost/README.md
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@@ -1,6 +1,6 @@

----------------------------------
## Vesselboost/1.0.2 ##
## Vesselboost/1.0.3 ##
This containers provides an interactive deep learning vessel segmentation algorithm

Example:
Expand All @@ -11,6 +11,6 @@ prediction.py --ds_path $path_to_images --out_path $path_to_output --pretrained

More documentation can be found here: https://github.com/KMarshallX/VesselBoost

To run applications outside of this container: ml vesselboost/1.0.2
To run applications outside of this container: ml vesselboost/1.0.3

----------------------------------
2 changes: 1 addition & 1 deletion recipes/vesselboost/test.sh
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Expand Up @@ -19,7 +19,7 @@ python3 /opt/code/python-ismrmrd-server/main.py -v -r -H=0.0.0.0 -p=9002 -s -S=/
rm /data/tof_openrecon_output.h5
# remove old nifti output data
rm /data/tof_openrecon_output.nii
python /opt/code/python-ismrmrd-server/client.py -G dataset -o /data/tof_openrecon_output.h5 /data/tof.h5
python /opt/code/python-ismrmrd-server/client.py -G dataset -o /data/tof_openrecon_output.h5 /data/tof.h5 -c vesselboost
cp tof_output/tof.nii /data/tof_openrecon_output.nii

#TEST GPU capability.
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