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[CI] generate conda envs also for all possible OS #1302

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[CI] generate conda envs also for all possible OS #1302

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dd017f9
[CI] generate conda envs also for all possible OS
JuliaSprenger Jun 28, 2023
b1aade8
[CI] fix conda envs generation also for all possible OS
JuliaSprenger Jun 29, 2023
acff100
[CI] add first version of os independant git-annex installation
JuliaSprenger Jun 29, 2023
8bbecef
[CI] make conde env location independant of OS
JuliaSprenger Jun 29, 2023
9b7297b
[CI] install git-annex version 8 for compatibility with GIN
JuliaSprenger Jun 29, 2023
edf9e00
[CI] fix datalad installer syntax
JuliaSprenger Jun 29, 2023
8b6ea5f
Rename chron job
JuliaSprenger Jul 27, 2023
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23 changes: 18 additions & 5 deletions .github/workflows/caches_cron_job.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,9 +12,11 @@ jobs:

create-conda-env-cache-if-missing:
name: Caching conda env
runs-on: "ubuntu-latest"
runs-on: ${{ matrix.os }}
strategy:
fail-fast: true
matrix:
os: ['ubuntu-latest', 'windows-latest', 'macos-latest']
defaults:
# by default run in bash mode (required for conda usage)
run:
Expand All @@ -38,7 +40,7 @@ jobs:
# * when package dependencies change
id: cache-conda-env
with:
path: /usr/share/miniconda/envs/neo-test-env
path: envs/neo-test-env
key: ${{ runner.os }}-conda-env-${{ steps.dependencies.outputs.hash }}-${{ steps.date.outputs.date }}

- name: Cache found?
Expand All @@ -48,10 +50,21 @@ jobs:
- uses: conda-incubator/[email protected]
if: steps.cache-conda-env.outputs.cache-hit != 'true'
with:
activate-environment: neo-test-env
activate-environment: ~/envs/neo-test-env
environment-file: environment_testing.yml
python-version: 3.9

- name: Installing datalad and git-annex
if: steps.cache-conda-env.outputs.cache-hit != 'true'
run: |
git config --global user.email "neo_ci@fake_mail.com"
git config --global user.name "neo CI"
python -m pip install -U pip # Official recommended way
pip install datalad-installer
datalad-installer --sudo ok --bin-dir ~/envs/neo-test-env/ git-annex --method datalad/packages
pip install datalad
git config --global filter.annex.process "git-annex filter-process" # recommended for efficiency

- name: Create the conda environment to be cached
if: steps.cache-conda-env.outputs.cache-hit != 'true'
# create conda env, configure git and install pip, neo and test dependencies from master
Expand All @@ -63,7 +76,7 @@ jobs:
pip install --upgrade -e .[test]

create-data-cache-if-missing:
name: Caching data env
name: Caching data
runs-on: "ubuntu-latest"
steps:

Expand All @@ -89,7 +102,7 @@ jobs:
git config --global user.name "neo CI"
python -m pip install -U pip # Official recommended way
pip install datalad-installer
datalad-installer --sudo ok git-annex --method datalad/packages
datalad-installer --sudo ok git-annex=8 --method datalad/packages
pip install datalad
git config --global filter.annex.process "git-annex filter-process" # recommended for efficiency

Expand Down
6 changes: 3 additions & 3 deletions .github/workflows/io-test.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -48,7 +48,7 @@ jobs:

- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: neo-test-env
activate-environment: ~/envs/neo-test-env
python-version: ${{ matrix.python-version }}

- name: Get current dependencies hash
Expand All @@ -62,7 +62,7 @@ jobs:
# * when package dependencies change
id: cache-conda-env
with:
path: /usr/share/miniconda/envs/neo-test-env
path: ~/envs/neo-test-env
key: ${{ runner.os }}-conda-env-${{ steps.dependencies.outputs.hash }}-${{ steps.date.outputs.date }}
# restore-keys match any key that starts with the restore-key
restore-keys: |
Expand All @@ -74,7 +74,7 @@ jobs:
# restore-key hits should result in `cache-hit` == 'false'
if: steps.cache-conda-env.outputs.cache-hit != 'true'
run: |
conda env update --name neo-test-env --file environment_testing.yml --prune
conda env update --prefix ~/envs --name neo-test-env --file environment_testing.yml --prune

- name: Configure git
run: |
Expand Down