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[Fix] Use default tolerances for np.testing.allclose() in WPLI ground truth test #572

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merged 3 commits into from
Jul 12, 2023
Merged

[Fix] Use default tolerances for np.testing.allclose() in WPLI ground truth test #572

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8a20284
use default tolerances for np.testing.allclose()
Jun 2, 2023
7bde5c4
Merge branch 'master' into fix/WPLI_unit_test_tolerance
Jul 3, 2023
de0d108
Merge branch 'master' into fix/WPLI_unit_test_tolerance
Jul 3, 2023
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6 changes: 3 additions & 3 deletions elephant/test/test_phase_analysis.py
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Original file line number Diff line number Diff line change
Expand Up @@ -496,22 +496,22 @@ def test_WPLI_ground_truth_consistency_real_LFP_dataset(self):
self.lfps1_real, self.lfps2_real, self.sf1_real)
np.testing.assert_allclose(
wpli, self.wpli_ground_truth_ft_connectivity_wpli_real,
atol=self.tolerance, rtol=self.tolerance, equal_nan=True)
equal_nan=True)
# np.array-input
with self.subTest(msg="np.array input"):
freq, wpli = elephant.phase_analysis.weighted_phase_lag_index(
self.lfps1_real.magnitude, self.lfps2_real.magnitude,
self.sf1_real)
np.testing.assert_allclose(
wpli, self.wpli_ground_truth_ft_connectivity_wpli_real,
atol=self.tolerance, rtol=self.tolerance, equal_nan=True)
equal_nan=True)
# neo.AnalogSignal-input
with self.subTest(msg="neo.AnalogSignal input"):
freq, wpli = elephant.phase_analysis.weighted_phase_lag_index(
self.lfps1_real_AnalogSignal, self.lfps2_real_AnalogSignal)
np.testing.assert_allclose(
wpli, self.wpli_ground_truth_ft_connectivity_wpli_real,
atol=self.tolerance, rtol=self.tolerance, equal_nan=True)
equal_nan=True)

def test_WPLI_ground_truth_consistency_artificial_LFP_dataset(self):
"""
Expand Down