Switch to Keras v3 save format for nn_ensemble #684
Workflow file for this run
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| name: CI/CD | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - '*' | |
| pull_request: | |
| workflow_dispatch: | |
| env: | |
| PIPX_HOME: "/home/runner/.cache/pipx" | |
| PIPX_BIN_DIR: "/home/runner/.local/bin" | |
| POETRY_VERSION: "1.5.1" | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-22.04 | |
| name: lint with isort, Black & flake8 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: "Prepare: restore caches, install Poetry, set up Python" | |
| uses: ./.github/actions/prepare | |
| with: | |
| python-version: "3.10" | |
| poetry-version: ${{ env.POETRY_VERSION }} | |
| - name: Install Python dev dependencies | |
| run: | | |
| poetry install --only dev | |
| - name: Lint with isort | |
| run: | | |
| poetry run isort . --check-only --diff | |
| - name: Lint with Black | |
| run: | | |
| poetry run black . --check --diff | |
| - name: Lint with flake8 | |
| run: | | |
| poetry run flake8 | |
| time-startup: | |
| runs-on: ubuntu-22.04 | |
| name: check CLI startup time | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: "Prepare: restore caches, install Poetry, set up Python" | |
| id: prepare | |
| uses: ./.github/actions/prepare | |
| with: | |
| python-version: "3.9" | |
| poetry-version: ${{ env.POETRY_VERSION }} | |
| - name: Install Python dependencies | |
| run: | | |
| poetry install | |
| - name: Check startup time | |
| run: | | |
| poetry run tests/time-startup.sh | |
| test: | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 15 | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10"] | |
| name: test on Python ${{ matrix.python-version }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install system packages | |
| run: | | |
| sudo apt-get install \ | |
| libvoikko1 \ | |
| voikko-fi | |
| - name: "Prepare: restore caches, install Poetry, set up Python" | |
| id: prepare | |
| uses: ./.github/actions/prepare | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| poetry-version: ${{ env.POETRY_VERSION }} | |
| - name: Install Python dependencies | |
| run: | | |
| # Selectively install the optional dependencies for some Python versions | |
| # For Python 3.8: | |
| if [[ ${{ matrix.python-version }} == '3.8' ]]; then | |
| poetry install -E "nn omikuji yake voikko stwfsa"; | |
| fi | |
| # For Python 3.9: | |
| if [[ ${{ matrix.python-version }} == '3.9' ]]; then | |
| poetry install -E "fasttext spacy"; | |
| # download the small English pretrained spaCy model needed by spacy analyzer | |
| poetry run python -m spacy download en_core_web_sm --upgrade-strategy only-if-needed | |
| fi | |
| # For Python 3.10: | |
| if [[ ${{ matrix.python-version }} == '3.10' ]]; then | |
| poetry install -E "nn omikuji yake stwfsa"; | |
| fi | |
| poetry run python -m nltk.downloader punkt | |
| - name: Test with pytest | |
| run: | | |
| poetry run pytest --cov=./ --cov-report xml | |
| if [[ ${{ matrix.python-version }} == '3.9' ]]; then | |
| poetry run pytest --cov=./ --cov-report xml --cov-append -m slow | |
| fi | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@81cd2dc8148241f03f5839d295e000b8f761e378 # v3.1.0 | |
| - name: Save cache | |
| if: steps.prepare.outputs.cache-matched-key != format('poetry-installation-and-cache-{0}-{1}-{2}', matrix.python-version, env.POETRY_VERSION, hashFiles('**/poetry.lock')) | |
| uses: actions/cache/save@v3 | |
| with: | |
| path: | | |
| ~/.cache/pipx/venvs | |
| ~/.local/bin | |
| ~/.cache/pypoetry/ | |
| # A new key is created to update the cache if some dependency has been updated | |
| key: poetry-installation-and-cache-${{ matrix.python-version }}-${{ env.POETRY_VERSION }}-${{ hashFiles('**/poetry.lock') }} | |
| test-docker-image: | |
| name: "test Docker image" | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 15 | |
| steps: | |
| - name: "Build image for testing" | |
| uses: docker/build-push-action@c56af957549030174b10d6867f20e78cfd7debc5 # v3.2.0 | |
| with: | |
| push: false | |
| tags: test-image | |
| - name: "Test with pytest" | |
| run: | | |
| docker run --rm --workdir /Annif test-image pytest -p no:cacheprovider | |
| publish-docker-latest: | |
| name: publish latest Docker image | |
| needs: [lint, test, test-docker-image] | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 15 | |
| if: github.event_name == 'push' && github.ref == 'refs/heads/main' | |
| steps: | |
| - name: Login to Quay.io | |
| uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a # v2.1.0 | |
| with: | |
| registry: quay.io | |
| username: ${{ secrets.YHTEENTOIMIVUUSPALVELUT_QUAY_IO_USERNAME }} | |
| password: ${{ secrets.YHTEENTOIMIVUUSPALVELUT_QUAY_IO_PASSWORD }} | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@57396166ad8aefe6098280995947635806a0e6ea # v4.1.1 | |
| with: | |
| images: quay.io/natlibfi/annif | |
| tags: | | |
| latest | |
| - name: Build and push to Quay.io | |
| uses: docker/build-push-action@c56af957549030174b10d6867f20e78cfd7debc5 # v3.2.0 | |
| with: | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| publish-release: | |
| name: publish release | |
| needs: [lint, test, test-docker-image] | |
| runs-on: ubuntu-22.04 | |
| if: github.event_name == 'push' && contains(github.ref, 'refs/tags/') | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: "Prepare: restore caches, install Poetry, set up Python" | |
| uses: ./.github/actions/prepare | |
| with: | |
| python-version: '3.10' | |
| poetry-version: ${{ env.POETRY_VERSION }} | |
| - name: Build and publish distribution to PyPI | |
| env: | |
| POETRY_HTTP_BASIC_PYPI_USERNAME: __token__ | |
| POETRY_HTTP_BASIC_PYPI_PASSWORD: ${{ secrets.PYPI_API_TOKEN }} | |
| run: | | |
| poetry publish --build | |
| - name: Login to Quay.io | |
| uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a # v2.1.0 | |
| with: | |
| registry: quay.io | |
| username: ${{ secrets.YHTEENTOIMIVUUSPALVELUT_QUAY_IO_USERNAME }} | |
| password: ${{ secrets.YHTEENTOIMIVUUSPALVELUT_QUAY_IO_PASSWORD }} | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@57396166ad8aefe6098280995947635806a0e6ea # v4.1.1 | |
| with: | |
| images: quay.io/natlibfi/annif | |
| tags: | | |
| type=semver,pattern={{version}},suffix=-{{date 'YYYYMMDD'}} | |
| type=semver,pattern={{version}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| - name: Build and push to Quay.io | |
| uses: docker/build-push-action@c56af957549030174b10d6867f20e78cfd7debc5 # v3.2.0 | |
| with: | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} |