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Issues list

Inability to separate T and B cells during cell typing.
#156 opened Jan 21, 2025 by DomenicoSkyWalker89
New article: CosMx Cell Profiles
#153 opened Jan 7, 2025 by mgrout81
@mgrout81
Optimize Napari Performance and Enable NVIDIA GPU Utilization for Speed Improvement
#150 opened Dec 27, 2024 by SanoKyohei
Draw polygon from flatfile
#149 opened Dec 26, 2024 by Lingxiao-LIU
3
flightpath for any cell types
#144 opened Dec 11, 2024 by patrickjdanaher
insitudiff enhancements
#141 opened Dec 3, 2024 by patrickjdanaher
9 tasks
2
Create staging branch for pre-deployment testing priority
#138 opened Nov 27, 2024 by eveilyeverafter
@eveilyeverafter
Introduction to working with CosMx SMI protein data
#132 opened Nov 25, 2024 by eveilyeverafter
Exporting ome.tiff files from napari
#131 opened Nov 25, 2024 by eveilyeverafter
will there be future GeoMx blog posts on how to analyze the data?
#129 opened Nov 15, 2024 by acjordan333
2
adjusting for cell contamination (segmentation error) in models
#127 opened Nov 14, 2024 by acjordan333
1
how to post CosMx data online documentation Improvements or additions to documentation
#126 opened Nov 14, 2024 by patrickjdanaher
1
cell typing - next round of guidance documentation Improvements or additions to documentation priority
#122 opened Nov 4, 2024 by patrickjdanaher
1
Profile matrices comparison enhancement New feature or request
#121 opened Nov 4, 2024 by eveilyeverafter
UMAP parameterization in CosMx SMI data
#120 opened Nov 4, 2024 by eveilyeverafter
spatial algorithms zoo - additions
#99 opened Aug 20, 2024 by patrickjdanaher
5 tasks
1
DE paper
#95 opened Aug 7, 2024 by patrickjdanaher
@dan11mcguire
2
multi-sample analyses - strategies writeup needed
#93 opened Aug 5, 2024 by patrickjdanaher
batch effects - analysis strategies writeup needed
#92 opened Aug 5, 2024 by patrickjdanaher
1
AtoMx custom modules: links / commentary / basics
#82 opened Jul 11, 2024 by patrickjdanaher
how to incorporate AtoMx into open-source analysis workflows writeup needed
#76 opened Jun 27, 2024 by patrickjdanaher
1
basic analysis vignette - add DE
#71 opened Jun 19, 2024 by patrickjdanaher
Update to make-composite.py script enhancement New feature or request
#68 opened Jun 18, 2024 by eveilyeverafter
@eveilyeverafter
1
lit review of good methods papers writeup needed
#51 opened Jun 4, 2024 by patrickjdanaher
topic: advanced cell typing priority writeup needed
#30 opened May 14, 2024 by patrickjdanaher
2
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